Experiment: Copper (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06270 and SGL_RS06275 are separated by 30 nucleotides SGL_RS06275 and SGL_RS06280 are separated by 127 nucleotides SGL_RS06280 and SGL_RS06285 are separated by 172 nucleotides
SGL_RS06270: SGL_RS06270 - class III poly(R)-hydroxyalkanoic acid synthase subunit PhaC, at 933,196 to 934,293
_RS06270
SGL_RS06275: SGL_RS06275 - hypothetical protein, at 934,324 to 934,707
_RS06275
SGL_RS06280: SGL_RS06280 - fasciclin domain-containing protein, at 934,835 to 935,236
_RS06280
SGL_RS06285: SGL_RS06285 - CO2 hydration protein, at 935,409 to 936,704
_RS06285
Position (kb) 934
935 Strain fitness (log2 ratio) -1
0
1
2 at 933.326 kb on + strand, within SGL_RS06270 at 933.418 kb on + strand, within SGL_RS06270 at 934.190 kb on - strand at 934.313 kb on - strand at 934.330 kb on + strand at 934.424 kb on - strand, within SGL_RS06275 at 934.646 kb on + strand, within SGL_RS06275 at 934.657 kb on + strand, within SGL_RS06275 at 934.789 kb on - strand at 934.810 kb on - strand at 935.031 kb on + strand, within SGL_RS06280 at 935.110 kb on - strand, within SGL_RS06280 at 935.142 kb on + strand, within SGL_RS06280 at 935.142 kb on - strand, within SGL_RS06280 at 935.142 kb on - strand, within SGL_RS06280 at 935.142 kb on - strand, within SGL_RS06280
Per-strain Table
Position Strand Gene LocusTag Fraction Copper (II) sulfate 3 uM remove 933,326 + SGL_RS06270 0.12 -0.1 933,418 + SGL_RS06270 0.20 -0.6 934,190 - +0.4 934,313 - +0.2 934,330 + +1.5 934,424 - SGL_RS06275 0.26 +1.8 934,646 + SGL_RS06275 0.84 +1.4 934,657 + SGL_RS06275 0.87 +1.8 934,789 - -0.4 934,810 - -0.1 935,031 + SGL_RS06280 0.49 +0.1 935,110 - SGL_RS06280 0.68 -0.5 935,142 + SGL_RS06280 0.76 +0.2 935,142 - SGL_RS06280 0.76 -0.0 935,142 - SGL_RS06280 0.76 -0.0 935,142 - SGL_RS06280 0.76 -0.2
Or see this region's nucleotide sequence