Experiment: Copper (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03070 and SGL_RS03075 are separated by 57 nucleotides SGL_RS03075 and SGL_RS03080 are separated by 191 nucleotides SGL_RS03080 and SGL_RS19410 are separated by 20 nucleotides SGL_RS19410 and SGL_RS03085 are separated by 60 nucleotides SGL_RS03085 and SGL_RS03090 are separated by 116 nucleotides
SGL_RS03070: SGL_RS03070 - tRNA-Ser, at 259,560 to 259,644
_RS03070
SGL_RS03075: SGL_RS03075 - shikimate kinase, at 259,702 to 260,271
_RS03075
SGL_RS03080: SGL_RS03080 - transaldolase, at 260,463 to 261,638
_RS03080
SGL_RS19410: SGL_RS19410 - hypothetical protein, at 261,659 to 261,802
_RS19410
SGL_RS03085: SGL_RS03085 - DUF2862 domain-containing protein, at 261,863 to 262,060
_RS03085
SGL_RS03090: SGL_RS03090 - ArsA family ATPase, at 262,177 to 263,265
_RS03090
Position (kb) 260
261
262 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 259.498 kb on - strand at 259.692 kb on - strand at 259.727 kb on + strand at 259.727 kb on + strand at 259.728 kb on - strand at 260.279 kb on + strand at 260.510 kb on + strand at 260.641 kb on - strand, within SGL_RS03080 at 260.691 kb on + strand, within SGL_RS03080 at 260.699 kb on - strand, within SGL_RS03080 at 261.192 kb on - strand, within SGL_RS03080 at 261.265 kb on + strand, within SGL_RS03080 at 261.276 kb on + strand, within SGL_RS03080 at 261.278 kb on - strand, within SGL_RS03080 at 261.310 kb on - strand, within SGL_RS03080 at 261.310 kb on - strand, within SGL_RS03080 at 261.395 kb on - strand, within SGL_RS03080 at 261.447 kb on - strand, within SGL_RS03080 at 261.518 kb on + strand, within SGL_RS03080 at 261.526 kb on - strand at 261.537 kb on - strand at 261.703 kb on - strand, within SGL_RS19410 at 261.743 kb on + strand, within SGL_RS19410 at 261.748 kb on + strand, within SGL_RS19410 at 261.876 kb on - strand at 262.005 kb on + strand, within SGL_RS03085 at 262.013 kb on - strand, within SGL_RS03085 at 262.067 kb on + strand at 262.219 kb on - strand at 262.269 kb on + strand at 262.271 kb on + strand at 262.272 kb on - strand at 262.282 kb on - strand at 262.315 kb on + strand, within SGL_RS03090 at 262.322 kb on - strand, within SGL_RS03090 at 262.324 kb on - strand, within SGL_RS03090 at 262.336 kb on + strand, within SGL_RS03090 at 262.384 kb on - strand, within SGL_RS03090 at 262.392 kb on + strand, within SGL_RS03090 at 262.478 kb on - strand, within SGL_RS03090 at 262.509 kb on + strand, within SGL_RS03090 at 262.576 kb on - strand, within SGL_RS03090 at 262.586 kb on - strand, within SGL_RS03090
Per-strain Table
Position Strand Gene LocusTag Fraction Copper (II) sulfate 3 uM remove 259,498 - +0.7 259,692 - +0.4 259,727 + -0.5 259,727 + +0.9 259,728 - +2.9 260,279 + -0.1 260,510 + +0.6 260,641 - SGL_RS03080 0.15 +0.3 260,691 + SGL_RS03080 0.19 -0.5 260,699 - SGL_RS03080 0.20 -0.0 261,192 - SGL_RS03080 0.62 +0.2 261,265 + SGL_RS03080 0.68 -0.0 261,276 + SGL_RS03080 0.69 +0.9 261,278 - SGL_RS03080 0.69 -0.0 261,310 - SGL_RS03080 0.72 +0.2 261,310 - SGL_RS03080 0.72 -0.1 261,395 - SGL_RS03080 0.79 -0.1 261,447 - SGL_RS03080 0.84 -0.2 261,518 + SGL_RS03080 0.90 +0.4 261,526 - -0.2 261,537 - +0.1 261,703 - SGL_RS19410 0.31 +0.3 261,743 + SGL_RS19410 0.58 +0.4 261,748 + SGL_RS19410 0.62 -0.0 261,876 - -6.4 262,005 + SGL_RS03085 0.72 -5.2 262,013 - SGL_RS03085 0.76 -2.9 262,067 + -0.2 262,219 - -0.7 262,269 + -1.3 262,271 + -1.6 262,272 - -2.1 262,282 - -2.2 262,315 + SGL_RS03090 0.13 -3.0 262,322 - SGL_RS03090 0.13 -2.0 262,324 - SGL_RS03090 0.13 -3.5 262,336 + SGL_RS03090 0.15 -2.2 262,384 - SGL_RS03090 0.19 -2.2 262,392 + SGL_RS03090 0.20 -1.2 262,478 - SGL_RS03090 0.28 -2.0 262,509 + SGL_RS03090 0.30 -1.9 262,576 - SGL_RS03090 0.37 -2.0 262,586 - SGL_RS03090 0.38 -1.9
Or see this region's nucleotide sequence