Experiment: Copper (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS02330 and SGL_RS02335 overlap by 36 nucleotides SGL_RS02335 and SGL_RS02340 are separated by 20 nucleotides
SGL_RS02330: SGL_RS02330 - 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))- dimethyltransferase RsmA, at 107,471 to 108,325
_RS02330
SGL_RS02335: SGL_RS02335 - 16S rRNA (uracil(1498)-N(3))-methyltransferase, at 108,290 to 109,201
_RS02335
SGL_RS02340: SGL_RS02340 - hypothetical protein, at 109,222 to 110,313
_RS02340
Position (kb) 108
109
110 Strain fitness (log2 ratio) -2
-1
0
1 at 107.328 kb on + strand at 107.550 kb on + strand at 107.558 kb on - strand, within SGL_RS02330 at 107.711 kb on - strand, within SGL_RS02330 at 107.782 kb on + strand, within SGL_RS02330 at 107.822 kb on + strand, within SGL_RS02330 at 107.855 kb on - strand, within SGL_RS02330 at 107.933 kb on - strand, within SGL_RS02330 at 108.158 kb on - strand, within SGL_RS02330 at 108.542 kb on + strand, within SGL_RS02335 at 108.544 kb on - strand, within SGL_RS02335 at 108.591 kb on + strand, within SGL_RS02335 at 108.599 kb on - strand, within SGL_RS02335 at 108.599 kb on - strand, within SGL_RS02335 at 108.599 kb on - strand, within SGL_RS02335 at 108.654 kb on + strand, within SGL_RS02335 at 108.655 kb on - strand, within SGL_RS02335 at 108.672 kb on - strand, within SGL_RS02335 at 108.780 kb on - strand, within SGL_RS02335 at 108.965 kb on + strand, within SGL_RS02335 at 108.973 kb on - strand, within SGL_RS02335 at 108.973 kb on - strand, within SGL_RS02335 at 108.973 kb on - strand, within SGL_RS02335 at 108.978 kb on - strand, within SGL_RS02335 at 108.978 kb on - strand, within SGL_RS02335 at 108.983 kb on - strand, within SGL_RS02335 at 109.001 kb on - strand, within SGL_RS02335 at 109.043 kb on + strand, within SGL_RS02335 at 109.051 kb on - strand, within SGL_RS02335 at 109.061 kb on + strand, within SGL_RS02335 at 109.144 kb on + strand at 109.253 kb on + strand at 109.278 kb on + strand at 109.280 kb on + strand at 109.479 kb on - strand, within SGL_RS02340 at 109.479 kb on - strand, within SGL_RS02340 at 109.497 kb on + strand, within SGL_RS02340 at 109.505 kb on - strand, within SGL_RS02340 at 109.505 kb on - strand, within SGL_RS02340 at 109.550 kb on - strand, within SGL_RS02340 at 109.608 kb on + strand, within SGL_RS02340 at 109.608 kb on + strand, within SGL_RS02340 at 109.608 kb on + strand, within SGL_RS02340 at 109.608 kb on + strand, within SGL_RS02340 at 109.608 kb on + strand, within SGL_RS02340 at 109.608 kb on + strand, within SGL_RS02340 at 109.616 kb on - strand, within SGL_RS02340 at 109.616 kb on - strand, within SGL_RS02340 at 109.616 kb on - strand, within SGL_RS02340 at 109.966 kb on - strand, within SGL_RS02340 at 110.044 kb on + strand, within SGL_RS02340 at 110.052 kb on - strand, within SGL_RS02340 at 110.064 kb on - strand, within SGL_RS02340 at 110.069 kb on - strand, within SGL_RS02340 at 110.157 kb on + strand, within SGL_RS02340 at 110.165 kb on - strand, within SGL_RS02340
Per-strain Table
Position Strand Gene LocusTag Fraction Copper (II) sulfate 3 uM remove 107,328 + -0.1 107,550 + -0.8 107,558 - SGL_RS02330 0.10 -1.4 107,711 - SGL_RS02330 0.28 -1.3 107,782 + SGL_RS02330 0.36 -1.1 107,822 + SGL_RS02330 0.41 +1.1 107,855 - SGL_RS02330 0.45 -0.8 107,933 - SGL_RS02330 0.54 +0.0 108,158 - SGL_RS02330 0.80 -1.9 108,542 + SGL_RS02335 0.28 -0.9 108,544 - SGL_RS02335 0.28 -0.9 108,591 + SGL_RS02335 0.33 -1.6 108,599 - SGL_RS02335 0.34 -0.9 108,599 - SGL_RS02335 0.34 -1.1 108,599 - SGL_RS02335 0.34 -0.6 108,654 + SGL_RS02335 0.40 -0.8 108,655 - SGL_RS02335 0.40 -1.1 108,672 - SGL_RS02335 0.42 -0.9 108,780 - SGL_RS02335 0.54 -1.3 108,965 + SGL_RS02335 0.74 -0.9 108,973 - SGL_RS02335 0.75 -1.3 108,973 - SGL_RS02335 0.75 -1.5 108,973 - SGL_RS02335 0.75 -0.5 108,978 - SGL_RS02335 0.75 -1.0 108,978 - SGL_RS02335 0.75 -1.2 108,983 - SGL_RS02335 0.76 -0.9 109,001 - SGL_RS02335 0.78 -0.9 109,043 + SGL_RS02335 0.83 -1.5 109,051 - SGL_RS02335 0.83 -1.3 109,061 + SGL_RS02335 0.85 -1.1 109,144 + -0.8 109,253 + -0.2 109,278 + -0.1 109,280 + +0.1 109,479 - SGL_RS02340 0.24 -0.5 109,479 - SGL_RS02340 0.24 +0.5 109,497 + SGL_RS02340 0.25 +0.4 109,505 - SGL_RS02340 0.26 +0.1 109,505 - SGL_RS02340 0.26 -0.2 109,550 - SGL_RS02340 0.30 -0.6 109,608 + SGL_RS02340 0.35 +0.0 109,608 + SGL_RS02340 0.35 -0.3 109,608 + SGL_RS02340 0.35 +0.1 109,608 + SGL_RS02340 0.35 +0.0 109,608 + SGL_RS02340 0.35 +0.2 109,608 + SGL_RS02340 0.35 -0.1 109,616 - SGL_RS02340 0.36 -0.1 109,616 - SGL_RS02340 0.36 +0.1 109,616 - SGL_RS02340 0.36 +0.0 109,966 - SGL_RS02340 0.68 +0.0 110,044 + SGL_RS02340 0.75 +0.2 110,052 - SGL_RS02340 0.76 +0.3 110,064 - SGL_RS02340 0.77 -0.4 110,069 - SGL_RS02340 0.78 -0.1 110,157 + SGL_RS02340 0.86 -0.2 110,165 - SGL_RS02340 0.86 -0.1
Or see this region's nucleotide sequence