Experiment: Copper (II) sulfate 3 uM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS01025 and SGL_RS01030 are separated by 262 nucleotides SGL_RS01030 and SGL_RS01035 are separated by 38 nucleotides SGL_RS01035 and SGL_RS01040 are separated by 91 nucleotides SGL_RS01040 and SGL_RS01045 are separated by 23 nucleotides
SGL_RS01025: SGL_RS01025 - RAMP superfamily CRISPR-associated protein, at 80,203 to 81,933
_RS01025
SGL_RS01030: SGL_RS01030 - hypothetical protein, at 82,196 to 82,591
_RS01030
SGL_RS01035: SGL_RS01035 - type III-B CRISPR module RAMP protein Cmr4, at 82,630 to 83,409
_RS01035
SGL_RS01040: SGL_RS01040 - peptidase, at 83,501 to 83,881
_RS01040
SGL_RS01045: SGL_RS01045 - type III-B CRISPR module-associated protein Cmr3, at 83,905 to 85,017
_RS01045
Position (kb) 82
83
84 Strain fitness (log2 ratio) -1
0
1 at 81.654 kb on + strand, within SGL_RS01025 at 81.654 kb on + strand, within SGL_RS01025 at 81.819 kb on + strand at 81.819 kb on + strand at 82.037 kb on + strand at 82.265 kb on + strand, within SGL_RS01030 at 82.266 kb on - strand, within SGL_RS01030 at 82.289 kb on - strand, within SGL_RS01030 at 82.511 kb on + strand, within SGL_RS01030 at 82.511 kb on + strand, within SGL_RS01030 at 82.519 kb on - strand, within SGL_RS01030 at 82.519 kb on - strand, within SGL_RS01030 at 82.535 kb on + strand, within SGL_RS01030 at 82.844 kb on + strand, within SGL_RS01035 at 83.156 kb on + strand, within SGL_RS01035 at 83.218 kb on + strand, within SGL_RS01035 at 83.371 kb on + strand at 83.535 kb on + strand at 83.778 kb on + strand, within SGL_RS01040 at 83.858 kb on - strand at 83.858 kb on - strand at 83.858 kb on - strand at 83.858 kb on - strand at 83.919 kb on + strand at 84.010 kb on - strand at 84.078 kb on + strand, within SGL_RS01045 at 84.180 kb on + strand, within SGL_RS01045 at 84.185 kb on + strand, within SGL_RS01045 at 84.239 kb on + strand, within SGL_RS01045 at 84.239 kb on - strand, within SGL_RS01045 at 84.277 kb on + strand, within SGL_RS01045 at 84.316 kb on + strand, within SGL_RS01045 at 84.316 kb on + strand, within SGL_RS01045 at 84.316 kb on + strand, within SGL_RS01045 at 84.316 kb on + strand, within SGL_RS01045 at 84.324 kb on - strand, within SGL_RS01045 at 84.324 kb on - strand, within SGL_RS01045 at 84.369 kb on - strand, within SGL_RS01045 at 84.400 kb on - strand, within SGL_RS01045
Per-strain Table
Position Strand Gene LocusTag Fraction Copper (II) sulfate 3 uM remove 81,654 + SGL_RS01025 0.84 +0.7 81,654 + SGL_RS01025 0.84 +0.8 81,819 + +0.8 81,819 + +0.6 82,037 + +0.6 82,265 + SGL_RS01030 0.17 +0.9 82,266 - SGL_RS01030 0.18 +0.7 82,289 - SGL_RS01030 0.23 +0.6 82,511 + SGL_RS01030 0.80 +0.7 82,511 + SGL_RS01030 0.80 +0.5 82,519 - SGL_RS01030 0.82 +0.5 82,519 - SGL_RS01030 0.82 +0.5 82,535 + SGL_RS01030 0.86 +0.9 82,844 + SGL_RS01035 0.27 +0.8 83,156 + SGL_RS01035 0.67 +0.7 83,218 + SGL_RS01035 0.75 +0.9 83,371 + +1.5 83,535 + +0.3 83,778 + SGL_RS01040 0.73 +0.6 83,858 - +0.5 83,858 - +0.6 83,858 - +0.8 83,858 - +0.7 83,919 + +0.8 84,010 - +0.8 84,078 + SGL_RS01045 0.16 +0.1 84,180 + SGL_RS01045 0.25 +0.9 84,185 + SGL_RS01045 0.25 +1.2 84,239 + SGL_RS01045 0.30 +0.6 84,239 - SGL_RS01045 0.30 +0.7 84,277 + SGL_RS01045 0.33 +0.3 84,316 + SGL_RS01045 0.37 +0.2 84,316 + SGL_RS01045 0.37 +0.2 84,316 + SGL_RS01045 0.37 +0.4 84,316 + SGL_RS01045 0.37 +0.3 84,324 - SGL_RS01045 0.38 +0.4 84,324 - SGL_RS01045 0.38 -0.1 84,369 - SGL_RS01045 0.42 +0.7 84,400 - SGL_RS01045 0.44 +0.8
Or see this region's nucleotide sequence