Experiment: no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS18035 and SGL_RS18040 are separated by 57 nucleotides SGL_RS18040 and SGL_RS18045 are separated by 70 nucleotides SGL_RS18045 and SGL_RS18050 are separated by 111 nucleotides
SGL_RS18035: SGL_RS18035 - efflux RND transporter permease subunit, at 3,504,297 to 3,506,969
_RS18035
SGL_RS18040: SGL_RS18040 - phasin family protein, at 3,507,027 to 3,507,452
_RS18040
SGL_RS18045: SGL_RS18045 - hypothetical protein, at 3,507,523 to 3,507,999
_RS18045
SGL_RS18050: SGL_RS18050 - tRNA pseudouridine(55) synthase TruB, at 3,508,111 to 3,509,001
_RS18050
Position (kb)
3507
3508 Strain fitness (log2 ratio)
-2
-1
0
1 at 3506.209 kb on - strand, within SGL_RS18035 at 3506.222 kb on + strand, within SGL_RS18035 at 3506.375 kb on + strand, within SGL_RS18035 at 3506.404 kb on + strand, within SGL_RS18035 at 3506.423 kb on + strand, within SGL_RS18035 at 3506.559 kb on + strand, within SGL_RS18035 at 3506.567 kb on - strand, within SGL_RS18035 at 3506.787 kb on + strand at 3507.091 kb on + strand, within SGL_RS18040 at 3507.091 kb on + strand, within SGL_RS18040 at 3507.248 kb on + strand, within SGL_RS18040 at 3507.248 kb on + strand, within SGL_RS18040 at 3507.249 kb on + strand, within SGL_RS18040 at 3507.256 kb on - strand, within SGL_RS18040 at 3507.263 kb on - strand, within SGL_RS18040 at 3507.363 kb on + strand, within SGL_RS18040 at 3507.486 kb on + strand at 3507.572 kb on + strand, within SGL_RS18045 at 3507.697 kb on - strand, within SGL_RS18045 at 3507.804 kb on + strand, within SGL_RS18045 at 3507.892 kb on - strand, within SGL_RS18045 at 3507.904 kb on - strand, within SGL_RS18045 at 3507.927 kb on + strand, within SGL_RS18045 at 3507.930 kb on - strand, within SGL_RS18045 at 3507.935 kb on - strand, within SGL_RS18045 at 3507.950 kb on - strand, within SGL_RS18045 at 3508.138 kb on + strand at 3508.139 kb on - strand at 3508.267 kb on - strand, within SGL_RS18050 at 3508.289 kb on - strand, within SGL_RS18050 at 3508.312 kb on - strand, within SGL_RS18050
Per-strain Table
Position Strand Gene LocusTag Fraction no stress control remove 3,506,209 - SGL_RS18035 0.72 -0.2 3,506,222 + SGL_RS18035 0.72 +0.3 3,506,375 + SGL_RS18035 0.78 -0.9 3,506,404 + SGL_RS18035 0.79 +0.5 3,506,423 + SGL_RS18035 0.80 -0.0 3,506,559 + SGL_RS18035 0.85 -0.3 3,506,567 - SGL_RS18035 0.85 -0.1 3,506,787 + +0.2 3,507,091 + SGL_RS18040 0.15 -1.0 3,507,091 + SGL_RS18040 0.15 -1.3 3,507,248 + SGL_RS18040 0.52 -2.0 3,507,248 + SGL_RS18040 0.52 -1.0 3,507,249 + SGL_RS18040 0.52 -1.6 3,507,256 - SGL_RS18040 0.54 -0.6 3,507,263 - SGL_RS18040 0.55 -1.7 3,507,363 + SGL_RS18040 0.79 -0.3 3,507,486 + +0.0 3,507,572 + SGL_RS18045 0.10 +0.0 3,507,697 - SGL_RS18045 0.36 +0.6 3,507,804 + SGL_RS18045 0.59 -0.1 3,507,892 - SGL_RS18045 0.77 -0.1 3,507,904 - SGL_RS18045 0.80 -0.0 3,507,927 + SGL_RS18045 0.85 -0.4 3,507,930 - SGL_RS18045 0.85 -0.3 3,507,935 - SGL_RS18045 0.86 +0.1 3,507,950 - SGL_RS18045 0.90 +0.3 3,508,138 + -0.1 3,508,139 - -0.4 3,508,267 - SGL_RS18050 0.18 -0.1 3,508,289 - SGL_RS18050 0.20 -0.1 3,508,312 - SGL_RS18050 0.23 -0.4
Or see this region's nucleotide sequence