Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS18040

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS18035 and SGL_RS18040 are separated by 57 nucleotidesSGL_RS18040 and SGL_RS18045 are separated by 70 nucleotidesSGL_RS18045 and SGL_RS18050 are separated by 111 nucleotides SGL_RS18035: SGL_RS18035 - efflux RND transporter permease subunit, at 3,504,297 to 3,506,969 _RS18035 SGL_RS18040: SGL_RS18040 - phasin family protein, at 3,507,027 to 3,507,452 _RS18040 SGL_RS18045: SGL_RS18045 - hypothetical protein, at 3,507,523 to 3,507,999 _RS18045 SGL_RS18050: SGL_RS18050 - tRNA pseudouridine(55) synthase TruB, at 3,508,111 to 3,509,001 _RS18050 Position (kb) 3507 3508Strain fitness (log2 ratio) -1 0 1at 3506.209 kb on - strand, within SGL_RS18035at 3506.222 kb on + strand, within SGL_RS18035at 3506.375 kb on + strand, within SGL_RS18035at 3506.404 kb on + strand, within SGL_RS18035at 3506.423 kb on + strand, within SGL_RS18035at 3506.559 kb on + strand, within SGL_RS18035at 3506.567 kb on - strand, within SGL_RS18035at 3506.787 kb on + strandat 3507.091 kb on + strand, within SGL_RS18040at 3507.091 kb on + strand, within SGL_RS18040at 3507.248 kb on + strand, within SGL_RS18040at 3507.248 kb on + strand, within SGL_RS18040at 3507.249 kb on + strand, within SGL_RS18040at 3507.256 kb on - strand, within SGL_RS18040at 3507.263 kb on - strand, within SGL_RS18040at 3507.363 kb on + strand, within SGL_RS18040at 3507.486 kb on + strandat 3507.572 kb on + strand, within SGL_RS18045at 3507.697 kb on - strand, within SGL_RS18045at 3507.804 kb on + strand, within SGL_RS18045at 3507.892 kb on - strand, within SGL_RS18045at 3507.904 kb on - strand, within SGL_RS18045at 3507.927 kb on + strand, within SGL_RS18045at 3507.930 kb on - strand, within SGL_RS18045at 3507.935 kb on - strand, within SGL_RS18045at 3507.950 kb on - strand, within SGL_RS18045at 3508.138 kb on + strandat 3508.139 kb on - strandat 3508.267 kb on - strand, within SGL_RS18050at 3508.289 kb on - strand, within SGL_RS18050at 3508.312 kb on - strand, within SGL_RS18050

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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3,506,209 - SGL_RS18035 0.72 +0.2
3,506,222 + SGL_RS18035 0.72 +0.4
3,506,375 + SGL_RS18035 0.78 +1.2
3,506,404 + SGL_RS18035 0.79 -0.1
3,506,423 + SGL_RS18035 0.80 -0.6
3,506,559 + SGL_RS18035 0.85 -0.8
3,506,567 - SGL_RS18035 0.85 +0.2
3,506,787 + +0.6
3,507,091 + SGL_RS18040 0.15 -0.9
3,507,091 + SGL_RS18040 0.15 -1.3
3,507,248 + SGL_RS18040 0.52 -0.8
3,507,248 + SGL_RS18040 0.52 -1.3
3,507,249 + SGL_RS18040 0.52 -1.2
3,507,256 - SGL_RS18040 0.54 -1.7
3,507,263 - SGL_RS18040 0.55 -1.4
3,507,363 + SGL_RS18040 0.79 +0.0
3,507,486 + +0.1
3,507,572 + SGL_RS18045 0.10 -0.0
3,507,697 - SGL_RS18045 0.36 -0.4
3,507,804 + SGL_RS18045 0.59 +0.1
3,507,892 - SGL_RS18045 0.77 -0.2
3,507,904 - SGL_RS18045 0.80 -0.0
3,507,927 + SGL_RS18045 0.85 -0.0
3,507,930 - SGL_RS18045 0.85 -0.5
3,507,935 - SGL_RS18045 0.86 +0.3
3,507,950 - SGL_RS18045 0.90 -0.5
3,508,138 + +0.0
3,508,139 - -0.3
3,508,267 - SGL_RS18050 0.18 -0.3
3,508,289 - SGL_RS18050 0.20 -0.2
3,508,312 - SGL_RS18050 0.23 -0.0

Or see this region's nucleotide sequence