Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17590

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17585 and SGL_RS17590 are separated by 37 nucleotidesSGL_RS17590 and SGL_RS17595 are separated by 27 nucleotidesSGL_RS17595 and SGL_RS17600 are separated by 184 nucleotides SGL_RS17585: SGL_RS17585 - IS4-like element IS4Sa family transposase, at 3,400,402 to 3,401,418 _RS17585 SGL_RS17590: SGL_RS17590 - PAS domain S-box protein, at 3,401,456 to 3,402,901 _RS17590 SGL_RS17595: SGL_RS17595 - hypothetical protein, at 3,402,929 to 3,403,372 _RS17595 SGL_RS17600: SGL_RS17600 - phycobilisome rod-core linker polypeptide, at 3,403,557 to 3,404,306 _RS17600 Position (kb) 3401 3402 3403Strain fitness (log2 ratio) -1 0 1at 3402.492 kb on - strand, within SGL_RS17590at 3402.901 kb on + strandat 3403.520 kb on - strandat 3403.733 kb on + strand, within SGL_RS17600at 3403.751 kb on + strand, within SGL_RS17600

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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3,402,492 - SGL_RS17590 0.72 -0.0
3,402,901 + +0.2
3,403,520 - +0.2
3,403,733 + SGL_RS17600 0.23 -0.0
3,403,751 + SGL_RS17600 0.26 +0.5

Or see this region's nucleotide sequence