Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17460 and SGL_RS17465 are separated by 280 nucleotides SGL_RS17465 and SGL_RS17470 overlap by 33 nucleotides SGL_RS17470 and SGL_RS17475 are separated by 51 nucleotides
SGL_RS17460: SGL_RS17460 - hypothetical protein, at 3,375,291 to 3,377,588
_RS17460
SGL_RS17465: SGL_RS17465 - hypothetical protein, at 3,377,869 to 3,378,279
_RS17465
SGL_RS17470: SGL_RS17470 - nickel pincer cofactor biosynthesis protein LarB, at 3,378,247 to 3,379,050
_RS17470
SGL_RS17475: SGL_RS17475 - M23 family metallopeptidase, at 3,379,102 to 3,379,767
_RS17475
Position (kb)
3378
3379
3380 Strain fitness (log2 ratio)
-2
-1
0
1 at 3377.508 kb on + strand at 3377.508 kb on + strand at 3377.513 kb on + strand at 3377.788 kb on + strand at 3377.796 kb on + strand at 3377.890 kb on + strand at 3377.903 kb on - strand at 3377.929 kb on + strand, within SGL_RS17465 at 3377.929 kb on + strand, within SGL_RS17465 at 3378.012 kb on + strand, within SGL_RS17465 at 3378.043 kb on - strand, within SGL_RS17465 at 3378.054 kb on - strand, within SGL_RS17465 at 3378.066 kb on + strand, within SGL_RS17465 at 3378.098 kb on - strand, within SGL_RS17465 at 3378.166 kb on + strand, within SGL_RS17465 at 3378.208 kb on + strand, within SGL_RS17465 at 3378.224 kb on - strand, within SGL_RS17465 at 3378.366 kb on + strand, within SGL_RS17470 at 3378.392 kb on + strand, within SGL_RS17470 at 3378.453 kb on + strand, within SGL_RS17470 at 3378.470 kb on + strand, within SGL_RS17470 at 3378.587 kb on + strand, within SGL_RS17470 at 3378.618 kb on + strand, within SGL_RS17470 at 3378.626 kb on - strand, within SGL_RS17470 at 3378.833 kb on + strand, within SGL_RS17470 at 3378.841 kb on - strand, within SGL_RS17470 at 3378.965 kb on + strand, within SGL_RS17470 at 3379.021 kb on + strand at 3379.114 kb on + strand at 3379.122 kb on - strand at 3379.170 kb on + strand, within SGL_RS17475 at 3379.180 kb on - strand, within SGL_RS17475 at 3379.300 kb on + strand, within SGL_RS17475 at 3379.331 kb on + strand, within SGL_RS17475 at 3379.438 kb on + strand, within SGL_RS17475 at 3379.482 kb on + strand, within SGL_RS17475 at 3379.573 kb on - strand, within SGL_RS17475 at 3379.621 kb on + strand, within SGL_RS17475 at 3379.633 kb on + strand, within SGL_RS17475 at 3379.640 kb on - strand, within SGL_RS17475 at 3379.641 kb on - strand, within SGL_RS17475 at 3379.649 kb on + strand, within SGL_RS17475 at 3379.802 kb on - strand at 3379.856 kb on + strand at 3379.900 kb on + strand at 3380.007 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 3,377,508 + +0.4 3,377,508 + -0.0 3,377,513 + -0.3 3,377,788 + -0.4 3,377,796 + +0.3 3,377,890 + +0.5 3,377,903 - -0.5 3,377,929 + SGL_RS17465 0.15 +1.5 3,377,929 + SGL_RS17465 0.15 +0.3 3,378,012 + SGL_RS17465 0.35 +0.6 3,378,043 - SGL_RS17465 0.42 +0.7 3,378,054 - SGL_RS17465 0.45 +0.1 3,378,066 + SGL_RS17465 0.48 +0.1 3,378,098 - SGL_RS17465 0.56 +0.2 3,378,166 + SGL_RS17465 0.72 -0.3 3,378,208 + SGL_RS17465 0.82 -0.5 3,378,224 - SGL_RS17465 0.86 -0.1 3,378,366 + SGL_RS17470 0.15 -1.9 3,378,392 + SGL_RS17470 0.18 -1.8 3,378,453 + SGL_RS17470 0.26 -1.2 3,378,470 + SGL_RS17470 0.28 -1.8 3,378,587 + SGL_RS17470 0.42 -2.3 3,378,618 + SGL_RS17470 0.46 -0.9 3,378,626 - SGL_RS17470 0.47 -2.2 3,378,833 + SGL_RS17470 0.73 -1.2 3,378,841 - SGL_RS17470 0.74 -0.9 3,378,965 + SGL_RS17470 0.89 +1.1 3,379,021 + -1.2 3,379,114 + +0.1 3,379,122 - +0.4 3,379,170 + SGL_RS17475 0.10 +0.7 3,379,180 - SGL_RS17475 0.12 +0.1 3,379,300 + SGL_RS17475 0.30 +0.4 3,379,331 + SGL_RS17475 0.34 +1.0 3,379,438 + SGL_RS17475 0.50 +0.6 3,379,482 + SGL_RS17475 0.57 +0.7 3,379,573 - SGL_RS17475 0.71 +0.1 3,379,621 + SGL_RS17475 0.78 +0.3 3,379,633 + SGL_RS17475 0.80 -0.4 3,379,640 - SGL_RS17475 0.81 +0.4 3,379,641 - SGL_RS17475 0.81 +0.7 3,379,649 + SGL_RS17475 0.82 +0.2 3,379,802 - +0.3 3,379,856 + +0.0 3,379,900 + -0.3 3,380,007 - -0.2
Or see this region's nucleotide sequence