Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17305
Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | Ethanol 2 vol% |
---|---|---|---|---|---|
remove | |||||
3,338,027 | - | SGL_RS17300 | 0.75 | +0.2 | |
3,338,071 | - | SGL_RS17300 | 0.77 | +0.1 | |
3,338,162 | + | SGL_RS17300 | 0.81 | +0.2 | |
3,338,294 | + | SGL_RS17300 | 0.88 | +0.1 | |
3,338,354 | - | -0.2 | |||
3,338,378 | + | +0.2 | |||
3,338,536 | - | +0.5 | |||
3,338,538 | + | +0.0 | |||
3,338,546 | - | +0.2 | |||
3,338,668 | - | -1.5 | |||
3,338,668 | - | -1.0 | |||
3,338,859 | - | SGL_RS17305 | 0.22 | -3.4 | |
3,338,912 | - | SGL_RS17305 | 0.29 | -0.5 | |
3,339,007 | - | SGL_RS17305 | 0.40 | -1.3 | |
3,339,032 | + | SGL_RS17305 | 0.44 | -1.1 | |
3,339,113 | + | SGL_RS17305 | 0.54 | -0.1 | |
3,339,113 | + | SGL_RS17305 | 0.54 | -0.3 | |
3,339,137 | + | SGL_RS17305 | 0.57 | -1.1 | |
3,339,255 | + | SGL_RS17305 | 0.71 | -1.5 | |
3,339,367 | + | SGL_RS17305 | 0.85 | -0.9 | |
3,339,553 | - | -0.4 | |||
3,339,819 | - | SGL_RS17310 | 0.22 | -0.2 | |
3,339,922 | - | SGL_RS17310 | 0.29 | +0.2 | |
3,339,950 | + | SGL_RS17310 | 0.31 | +0.5 | |
3,340,169 | - | SGL_RS17310 | 0.46 | +0.3 | |
3,340,280 | + | SGL_RS17310 | 0.53 | -1.1 | |
3,340,313 | + | SGL_RS17310 | 0.55 | +0.1 | |
3,340,448 | + | SGL_RS17310 | 0.64 | +0.0 |
Or see this region's nucleotide sequence