Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS17305

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS17300 and SGL_RS17305 are separated by 133 nucleotidesSGL_RS17305 and SGL_RS17310 are separated by 14 nucleotides SGL_RS17300: SGL_RS17300 - M3 family metallopeptidase, at 3,336,464 to 3,338,548 _RS17300 SGL_RS17305: SGL_RS17305 - pyrroline-5-carboxylate reductase, at 3,338,682 to 3,339,485 _RS17305 SGL_RS17310: SGL_RS17310 - glycoside hydrolase 100 family protein, at 3,339,500 to 3,340,969 _RS17310 Position (kb) 3338 3339 3340Strain fitness (log2 ratio) -3 -2 -1 0 1at 3338.027 kb on - strand, within SGL_RS17300at 3338.071 kb on - strand, within SGL_RS17300at 3338.162 kb on + strand, within SGL_RS17300at 3338.294 kb on + strand, within SGL_RS17300at 3338.354 kb on - strandat 3338.378 kb on + strandat 3338.536 kb on - strandat 3338.538 kb on + strandat 3338.546 kb on - strandat 3338.668 kb on - strandat 3338.668 kb on - strandat 3338.859 kb on - strand, within SGL_RS17305at 3338.912 kb on - strand, within SGL_RS17305at 3339.007 kb on - strand, within SGL_RS17305at 3339.032 kb on + strand, within SGL_RS17305at 3339.113 kb on + strand, within SGL_RS17305at 3339.113 kb on + strand, within SGL_RS17305at 3339.137 kb on + strand, within SGL_RS17305at 3339.255 kb on + strand, within SGL_RS17305at 3339.367 kb on + strand, within SGL_RS17305at 3339.553 kb on - strandat 3339.819 kb on - strand, within SGL_RS17310at 3339.922 kb on - strand, within SGL_RS17310at 3339.950 kb on + strand, within SGL_RS17310at 3340.169 kb on - strand, within SGL_RS17310at 3340.280 kb on + strand, within SGL_RS17310at 3340.313 kb on + strand, within SGL_RS17310at 3340.448 kb on + strand, within SGL_RS17310

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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3,338,027 - SGL_RS17300 0.75 +0.2
3,338,071 - SGL_RS17300 0.77 +0.1
3,338,162 + SGL_RS17300 0.81 +0.2
3,338,294 + SGL_RS17300 0.88 +0.1
3,338,354 - -0.2
3,338,378 + +0.2
3,338,536 - +0.5
3,338,538 + +0.0
3,338,546 - +0.2
3,338,668 - -1.5
3,338,668 - -1.0
3,338,859 - SGL_RS17305 0.22 -3.4
3,338,912 - SGL_RS17305 0.29 -0.5
3,339,007 - SGL_RS17305 0.40 -1.3
3,339,032 + SGL_RS17305 0.44 -1.1
3,339,113 + SGL_RS17305 0.54 -0.1
3,339,113 + SGL_RS17305 0.54 -0.3
3,339,137 + SGL_RS17305 0.57 -1.1
3,339,255 + SGL_RS17305 0.71 -1.5
3,339,367 + SGL_RS17305 0.85 -0.9
3,339,553 - -0.4
3,339,819 - SGL_RS17310 0.22 -0.2
3,339,922 - SGL_RS17310 0.29 +0.2
3,339,950 + SGL_RS17310 0.31 +0.5
3,340,169 - SGL_RS17310 0.46 +0.3
3,340,280 + SGL_RS17310 0.53 -1.1
3,340,313 + SGL_RS17310 0.55 +0.1
3,340,448 + SGL_RS17310 0.64 +0.0

Or see this region's nucleotide sequence