Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS17055 and SGL_RS17060 are separated by 21 nucleotides SGL_RS17060 and SGL_RS17065 are separated by 134 nucleotides SGL_RS17065 and SGL_RS17070 are separated by 191 nucleotides SGL_RS17070 and SGL_RS17075 are separated by 60 nucleotides
SGL_RS17055: SGL_RS17055 - UDP-N-acetylmuramate dehydrogenase, at 3,280,979 to 3,281,932
_RS17055
SGL_RS17060: SGL_RS17060 - hypothetical protein, at 3,281,954 to 3,282,307
_RS17060
SGL_RS17065: SGL_RS17065 - bacterioferritin, at 3,282,442 to 3,282,912
_RS17065
SGL_RS17070: SGL_RS17070 - DUF3146 family protein, at 3,283,104 to 3,283,406
_RS17070
SGL_RS17075: SGL_RS17075 - recombination mediator RecR, at 3,283,467 to 3,284,165
_RS17075
Position (kb) 3282
3283 Strain fitness (log2 ratio) -2
-1
0
1 at 3281.986 kb on - strand at 3282.023 kb on + strand, within SGL_RS17060 at 3282.025 kb on - strand, within SGL_RS17060 at 3282.032 kb on + strand, within SGL_RS17060 at 3282.037 kb on + strand, within SGL_RS17060 at 3282.037 kb on - strand, within SGL_RS17060 at 3282.126 kb on - strand, within SGL_RS17060 at 3282.330 kb on - strand at 3282.342 kb on - strand at 3282.536 kb on - strand, within SGL_RS17065 at 3282.574 kb on + strand, within SGL_RS17065 at 3282.616 kb on + strand, within SGL_RS17065 at 3282.633 kb on + strand, within SGL_RS17065 at 3282.889 kb on - strand at 3283.099 kb on - strand at 3283.303 kb on - strand, within SGL_RS17070 at 3283.494 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 3,281,986 - -0.9 3,282,023 + SGL_RS17060 0.19 -0.1 3,282,025 - SGL_RS17060 0.20 +0.3 3,282,032 + SGL_RS17060 0.22 -0.5 3,282,037 + SGL_RS17060 0.23 -0.4 3,282,037 - SGL_RS17060 0.23 -0.0 3,282,126 - SGL_RS17060 0.49 -1.4 3,282,330 - +0.5 3,282,342 - -1.0 3,282,536 - SGL_RS17065 0.20 -1.1 3,282,574 + SGL_RS17065 0.28 -1.3 3,282,616 + SGL_RS17065 0.37 -1.0 3,282,633 + SGL_RS17065 0.41 -1.9 3,282,889 - -0.8 3,283,099 - -0.2 3,283,303 - SGL_RS17070 0.66 -0.3 3,283,494 + -0.2
Or see this region's nucleotide sequence