Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS16205 and SGL_RS16210 overlap by 17 nucleotides SGL_RS16210 and SGL_RS16215 are separated by 209 nucleotides SGL_RS16215 and SGL_RS16220 are separated by 140 nucleotides
SGL_RS16205: SGL_RS16205 - hydantoinase B/oxoprolinase family protein, at 3,084,677 to 3,088,435
_RS16205
SGL_RS16210: SGL_RS16210 - CYTH domain-containing protein, at 3,088,419 to 3,088,883
_RS16210
SGL_RS16215: SGL_RS16215 - hypothetical protein, at 3,089,093 to 3,089,515
_RS16215
SGL_RS16220: SGL_RS16220 - APC family permease, at 3,089,656 to 3,091,014
_RS16220
Position (kb)
3088
3089 Strain fitness (log2 ratio)
-1
0
1 at 3087.472 kb on - strand, within SGL_RS16205 at 3087.545 kb on + strand, within SGL_RS16205 at 3087.609 kb on - strand, within SGL_RS16205 at 3087.626 kb on + strand, within SGL_RS16205 at 3087.634 kb on - strand, within SGL_RS16205 at 3087.674 kb on + strand, within SGL_RS16205 at 3087.682 kb on - strand, within SGL_RS16205 at 3087.682 kb on - strand, within SGL_RS16205 at 3087.682 kb on - strand, within SGL_RS16205 at 3087.879 kb on + strand, within SGL_RS16205 at 3087.928 kb on + strand, within SGL_RS16205 at 3087.938 kb on + strand, within SGL_RS16205 at 3088.075 kb on - strand at 3088.192 kb on + strand at 3088.291 kb on + strand at 3088.415 kb on + strand at 3088.415 kb on + strand at 3088.415 kb on + strand at 3088.415 kb on + strand at 3088.517 kb on + strand, within SGL_RS16210 at 3088.588 kb on + strand, within SGL_RS16210 at 3088.595 kb on - strand, within SGL_RS16210 at 3088.826 kb on - strand, within SGL_RS16210 at 3089.662 kb on + strand at 3089.662 kb on + strand at 3089.766 kb on + strand at 3089.776 kb on + strand at 3089.800 kb on - strand, within SGL_RS16220 at 3089.852 kb on + strand, within SGL_RS16220
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 3,087,472 - SGL_RS16205 0.74 +0.6 3,087,545 + SGL_RS16205 0.76 +0.1 3,087,609 - SGL_RS16205 0.78 -0.3 3,087,626 + SGL_RS16205 0.78 +0.2 3,087,634 - SGL_RS16205 0.79 -0.4 3,087,674 + SGL_RS16205 0.80 +0.4 3,087,682 - SGL_RS16205 0.80 +0.2 3,087,682 - SGL_RS16205 0.80 -0.1 3,087,682 - SGL_RS16205 0.80 -0.1 3,087,879 + SGL_RS16205 0.85 +0.2 3,087,928 + SGL_RS16205 0.86 +0.3 3,087,938 + SGL_RS16205 0.87 -0.1 3,088,075 - +0.2 3,088,192 + +0.1 3,088,291 + +0.0 3,088,415 + +0.3 3,088,415 + -0.4 3,088,415 + +0.1 3,088,415 + +0.6 3,088,517 + SGL_RS16210 0.21 +0.7 3,088,588 + SGL_RS16210 0.36 +0.5 3,088,595 - SGL_RS16210 0.38 +0.6 3,088,826 - SGL_RS16210 0.88 +0.7 3,089,662 + -0.1 3,089,662 + +0.0 3,089,766 + +0.1 3,089,776 + -0.2 3,089,800 - SGL_RS16220 0.11 +0.1 3,089,852 + SGL_RS16220 0.14 +0.1
Or see this region's nucleotide sequence