Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15780 and SGL_RS15785 are separated by 156 nucleotides SGL_RS15785 and SGL_RS15790 are separated by 111 nucleotides SGL_RS15790 and SGL_RS15795 are separated by 187 nucleotides SGL_RS15795 and SGL_RS15800 are separated by 125 nucleotides
SGL_RS15780: SGL_RS15780 - HAMP domain-containing sensor histidine kinase, at 2,990,525 to 2,991,898
_RS15780
SGL_RS15785: SGL_RS15785 - ParA family protein, at 2,992,055 to 2,992,690
_RS15785
SGL_RS15790: SGL_RS15790 - hypothetical protein, at 2,992,802 to 2,993,323
_RS15790
SGL_RS15795: SGL_RS15795 - hypothetical protein, at 2,993,511 to 2,994,062
_RS15795
SGL_RS15800: SGL_RS15800 - PP2C family protein-serine/threonine phosphatase, at 2,994,188 to 2,995,717
_RS15800
Position (kb)
2992
2993
2994 Strain fitness (log2 ratio)
-2
-1
0
1 at 2991.823 kb on + strand at 2991.841 kb on - strand at 2991.943 kb on + strand at 2991.987 kb on - strand at 2992.035 kb on + strand at 2992.035 kb on + strand at 2992.035 kb on + strand at 2992.043 kb on - strand at 2992.079 kb on + strand at 2992.081 kb on + strand at 2992.127 kb on - strand, within SGL_RS15785 at 2992.235 kb on - strand, within SGL_RS15785 at 2992.286 kb on - strand, within SGL_RS15785 at 2992.316 kb on + strand, within SGL_RS15785 at 2992.439 kb on + strand, within SGL_RS15785 at 2992.441 kb on + strand, within SGL_RS15785 at 2992.463 kb on - strand, within SGL_RS15785 at 2992.500 kb on - strand, within SGL_RS15785 at 2992.544 kb on + strand, within SGL_RS15785 at 2992.594 kb on - strand, within SGL_RS15785 at 2992.596 kb on + strand, within SGL_RS15785 at 2992.602 kb on + strand, within SGL_RS15785 at 2992.828 kb on + strand at 2992.852 kb on + strand at 2993.012 kb on - strand, within SGL_RS15790 at 2993.086 kb on - strand, within SGL_RS15790 at 2993.233 kb on - strand, within SGL_RS15790 at 2993.233 kb on - strand, within SGL_RS15790 at 2993.239 kb on + strand, within SGL_RS15790 at 2993.239 kb on + strand, within SGL_RS15790 at 2993.239 kb on + strand, within SGL_RS15790 at 2993.247 kb on - strand, within SGL_RS15790 at 2993.247 kb on - strand, within SGL_RS15790 at 2993.247 kb on - strand, within SGL_RS15790 at 2993.247 kb on - strand, within SGL_RS15790 at 2993.247 kb on - strand, within SGL_RS15790 at 2993.247 kb on - strand, within SGL_RS15790 at 2993.247 kb on - strand, within SGL_RS15790 at 2993.296 kb on - strand at 2993.442 kb on + strand at 2993.452 kb on + strand at 2993.472 kb on + strand at 2993.581 kb on - strand, within SGL_RS15795 at 2993.591 kb on - strand, within SGL_RS15795 at 2993.601 kb on + strand, within SGL_RS15795 at 2993.601 kb on + strand, within SGL_RS15795 at 2993.609 kb on - strand, within SGL_RS15795 at 2993.611 kb on + strand, within SGL_RS15795 at 2993.663 kb on - strand, within SGL_RS15795 at 2993.753 kb on + strand, within SGL_RS15795 at 2993.753 kb on + strand, within SGL_RS15795 at 2993.797 kb on + strand, within SGL_RS15795 at 2993.841 kb on - strand, within SGL_RS15795 at 2993.845 kb on + strand, within SGL_RS15795 at 2993.856 kb on + strand, within SGL_RS15795 at 2993.865 kb on + strand, within SGL_RS15795 at 2993.870 kb on + strand, within SGL_RS15795 at 2993.895 kb on - strand, within SGL_RS15795 at 2993.934 kb on + strand, within SGL_RS15795 at 2994.007 kb on - strand at 2994.180 kb on + strand at 2994.202 kb on + strand at 2994.210 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 2,991,823 + +0.6 2,991,841 - +0.4 2,991,943 + +0.2 2,991,987 - +0.3 2,992,035 + -1.0 2,992,035 + -1.2 2,992,035 + -0.8 2,992,043 - -1.8 2,992,079 + -0.7 2,992,081 + -1.1 2,992,127 - SGL_RS15785 0.11 -1.4 2,992,235 - SGL_RS15785 0.28 -0.9 2,992,286 - SGL_RS15785 0.36 -0.2 2,992,316 + SGL_RS15785 0.41 -0.4 2,992,439 + SGL_RS15785 0.60 -0.2 2,992,441 + SGL_RS15785 0.61 -1.4 2,992,463 - SGL_RS15785 0.64 -1.6 2,992,500 - SGL_RS15785 0.70 -0.4 2,992,544 + SGL_RS15785 0.77 -1.2 2,992,594 - SGL_RS15785 0.85 -0.6 2,992,596 + SGL_RS15785 0.85 -1.4 2,992,602 + SGL_RS15785 0.86 -0.7 2,992,828 + +0.2 2,992,852 + -1.9 2,993,012 - SGL_RS15790 0.40 -1.1 2,993,086 - SGL_RS15790 0.54 -1.5 2,993,233 - SGL_RS15790 0.83 -0.7 2,993,233 - SGL_RS15790 0.83 -0.7 2,993,239 + SGL_RS15790 0.84 -0.6 2,993,239 + SGL_RS15790 0.84 -1.2 2,993,239 + SGL_RS15790 0.84 -0.9 2,993,247 - SGL_RS15790 0.85 -0.7 2,993,247 - SGL_RS15790 0.85 -1.2 2,993,247 - SGL_RS15790 0.85 -1.2 2,993,247 - SGL_RS15790 0.85 -0.8 2,993,247 - SGL_RS15790 0.85 -1.5 2,993,247 - SGL_RS15790 0.85 -1.5 2,993,247 - SGL_RS15790 0.85 -1.2 2,993,296 - -2.6 2,993,442 + +0.1 2,993,452 + +0.4 2,993,472 + -0.0 2,993,581 - SGL_RS15795 0.13 +0.9 2,993,591 - SGL_RS15795 0.14 +0.0 2,993,601 + SGL_RS15795 0.16 +0.1 2,993,601 + SGL_RS15795 0.16 +0.3 2,993,609 - SGL_RS15795 0.18 +0.2 2,993,611 + SGL_RS15795 0.18 -0.1 2,993,663 - SGL_RS15795 0.28 +0.1 2,993,753 + SGL_RS15795 0.44 -0.0 2,993,753 + SGL_RS15795 0.44 +0.2 2,993,797 + SGL_RS15795 0.52 +0.3 2,993,841 - SGL_RS15795 0.60 -0.0 2,993,845 + SGL_RS15795 0.61 +0.3 2,993,856 + SGL_RS15795 0.62 -0.1 2,993,865 + SGL_RS15795 0.64 +0.9 2,993,870 + SGL_RS15795 0.65 +0.4 2,993,895 - SGL_RS15795 0.70 +0.4 2,993,934 + SGL_RS15795 0.77 +0.6 2,994,007 - +0.8 2,994,180 + -0.1 2,994,202 + -0.3 2,994,210 - -0.4
Or see this region's nucleotide sequence