Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS15125 and SGL_RS15130 are separated by 30 nucleotides SGL_RS15130 and SGL_RS15135 are separated by 66 nucleotides SGL_RS15135 and SGL_RS15140 are separated by 107 nucleotides
SGL_RS15125: SGL_RS15125 - MoxR family ATPase, at 2,842,772 to 2,843,683
_RS15125
SGL_RS15130: SGL_RS15130 - dTDP-glucose 4,6-dehydratase, at 2,843,714 to 2,844,742
_RS15130
SGL_RS15135: SGL_RS15135 - hypothetical protein, at 2,844,809 to 2,845,072
_RS15135
SGL_RS15140: SGL_RS15140 - elongation factor G, at 2,845,180 to 2,847,189
_RS15140
Position (kb)
2843
2844
2845 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2842.722 kb on - strand at 2842.822 kb on + strand at 2842.836 kb on - strand at 2842.861 kb on + strand at 2842.878 kb on - strand, within SGL_RS15125 at 2842.890 kb on - strand, within SGL_RS15125 at 2842.969 kb on - strand, within SGL_RS15125 at 2843.213 kb on + strand, within SGL_RS15125 at 2843.336 kb on - strand, within SGL_RS15125 at 2843.441 kb on + strand, within SGL_RS15125 at 2843.441 kb on + strand, within SGL_RS15125 at 2843.449 kb on - strand, within SGL_RS15125 at 2843.449 kb on - strand, within SGL_RS15125 at 2843.451 kb on - strand, within SGL_RS15125 at 2843.490 kb on + strand, within SGL_RS15125 at 2843.511 kb on - strand, within SGL_RS15125 at 2843.534 kb on + strand, within SGL_RS15125 at 2843.609 kb on - strand at 2843.768 kb on - strand at 2844.027 kb on - strand, within SGL_RS15130 at 2844.089 kb on + strand, within SGL_RS15130 at 2844.187 kb on - strand, within SGL_RS15130 at 2844.331 kb on + strand, within SGL_RS15130 at 2844.409 kb on + strand, within SGL_RS15130 at 2844.419 kb on + strand, within SGL_RS15130 at 2844.451 kb on - strand, within SGL_RS15130 at 2844.466 kb on - strand, within SGL_RS15130 at 2844.649 kb on - strand at 2844.662 kb on - strand at 2844.728 kb on - strand at 2844.732 kb on + strand at 2844.889 kb on - strand, within SGL_RS15135 at 2844.908 kb on + strand, within SGL_RS15135 at 2844.993 kb on + strand, within SGL_RS15135 at 2845.109 kb on - strand at 2845.228 kb on - strand at 2845.252 kb on - strand at 2845.512 kb on + strand, within SGL_RS15140 at 2845.520 kb on - strand, within SGL_RS15140 at 2845.524 kb on + strand, within SGL_RS15140 at 2845.576 kb on + strand, within SGL_RS15140 at 2845.584 kb on - strand, within SGL_RS15140 at 2845.589 kb on - strand, within SGL_RS15140 at 2845.686 kb on + strand, within SGL_RS15140 at 2845.723 kb on + strand, within SGL_RS15140
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 2,842,722 - +0.3 2,842,822 + +1.2 2,842,836 - +1.1 2,842,861 + +1.2 2,842,878 - SGL_RS15125 0.12 +1.2 2,842,890 - SGL_RS15125 0.13 +1.5 2,842,969 - SGL_RS15125 0.22 +1.4 2,843,213 + SGL_RS15125 0.48 +1.6 2,843,336 - SGL_RS15125 0.62 +1.5 2,843,441 + SGL_RS15125 0.73 +0.9 2,843,441 + SGL_RS15125 0.73 +0.6 2,843,449 - SGL_RS15125 0.74 +1.5 2,843,449 - SGL_RS15125 0.74 +1.5 2,843,451 - SGL_RS15125 0.74 +1.4 2,843,490 + SGL_RS15125 0.79 +0.5 2,843,511 - SGL_RS15125 0.81 +0.9 2,843,534 + SGL_RS15125 0.84 +0.7 2,843,609 - +1.6 2,843,768 - -2.8 2,844,027 - SGL_RS15130 0.30 -2.0 2,844,089 + SGL_RS15130 0.36 -2.4 2,844,187 - SGL_RS15130 0.46 -2.8 2,844,331 + SGL_RS15130 0.60 -2.7 2,844,409 + SGL_RS15130 0.68 -2.3 2,844,419 + SGL_RS15130 0.69 -2.8 2,844,451 - SGL_RS15130 0.72 -3.0 2,844,466 - SGL_RS15130 0.73 -1.9 2,844,649 - -2.3 2,844,662 - -2.0 2,844,728 - +1.4 2,844,732 + -0.7 2,844,889 - SGL_RS15135 0.30 +0.4 2,844,908 + SGL_RS15135 0.38 +0.2 2,844,993 + SGL_RS15135 0.70 -0.3 2,845,109 - +0.2 2,845,228 - +0.8 2,845,252 - -0.1 2,845,512 + SGL_RS15140 0.17 -0.9 2,845,520 - SGL_RS15140 0.17 +1.4 2,845,524 + SGL_RS15140 0.17 +2.1 2,845,576 + SGL_RS15140 0.20 +0.2 2,845,584 - SGL_RS15140 0.20 -0.4 2,845,589 - SGL_RS15140 0.20 -0.5 2,845,686 + SGL_RS15140 0.25 +0.6 2,845,723 + SGL_RS15140 0.27 -0.1
Or see this region's nucleotide sequence