Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS15095

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS15085 and SGL_RS15095 are separated by 234 nucleotidesSGL_RS15095 and SGL_RS15100 overlap by 52 nucleotides SGL_RS15085: SGL_RS15085 - alanine racemase, at 2,831,881 to 2,833,083 _RS15085 SGL_RS15095: SGL_RS15095 - PAS domain S-box protein, at 2,833,318 to 2,835,867 _RS15095 SGL_RS15100: SGL_RS15100 - SulP family inorganic anion transporter, at 2,835,816 to 2,837,510 _RS15100 Position (kb) 2833 2834 2835 2836Strain fitness (log2 ratio) -1 0 1at 2833.373 kb on + strandat 2833.517 kb on - strandat 2833.713 kb on - strand, within SGL_RS15095at 2833.916 kb on + strand, within SGL_RS15095at 2834.949 kb on - strand, within SGL_RS15095at 2834.949 kb on - strand, within SGL_RS15095at 2835.139 kb on + strand, within SGL_RS15095at 2835.205 kb on - strand, within SGL_RS15095at 2835.247 kb on + strand, within SGL_RS15095at 2835.374 kb on + strand, within SGL_RS15095at 2835.382 kb on - strand, within SGL_RS15095at 2835.382 kb on - strand, within SGL_RS15095at 2835.487 kb on - strand, within SGL_RS15095at 2835.509 kb on + strand, within SGL_RS15095at 2835.510 kb on + strand, within SGL_RS15095at 2835.569 kb on + strand, within SGL_RS15095at 2835.754 kb on + strandat 2835.789 kb on + strandat 2835.797 kb on - strandat 2835.812 kb on + strandat 2836.125 kb on - strand, within SGL_RS15100at 2836.210 kb on - strand, within SGL_RS15100at 2836.270 kb on + strand, within SGL_RS15100at 2836.401 kb on + strand, within SGL_RS15100at 2836.428 kb on - strand, within SGL_RS15100at 2836.556 kb on - strand, within SGL_RS15100at 2836.557 kb on + strand, within SGL_RS15100at 2836.562 kb on + strand, within SGL_RS15100at 2836.606 kb on - strand, within SGL_RS15100at 2836.654 kb on + strand, within SGL_RS15100at 2836.694 kb on - strand, within SGL_RS15100at 2836.782 kb on + strand, within SGL_RS15100at 2836.798 kb on + strand, within SGL_RS15100at 2836.798 kb on + strand, within SGL_RS15100at 2836.798 kb on + strand, within SGL_RS15100at 2836.823 kb on - strand, within SGL_RS15100

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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2,833,373 + +0.1
2,833,517 - +0.2
2,833,713 - SGL_RS15095 0.15 +0.2
2,833,916 + SGL_RS15095 0.23 -0.2
2,834,949 - SGL_RS15095 0.64 -0.1
2,834,949 - SGL_RS15095 0.64 -0.2
2,835,139 + SGL_RS15095 0.71 +0.3
2,835,205 - SGL_RS15095 0.74 +0.2
2,835,247 + SGL_RS15095 0.76 +0.1
2,835,374 + SGL_RS15095 0.81 +0.1
2,835,382 - SGL_RS15095 0.81 -0.5
2,835,382 - SGL_RS15095 0.81 +0.0
2,835,487 - SGL_RS15095 0.85 +0.3
2,835,509 + SGL_RS15095 0.86 -0.0
2,835,510 + SGL_RS15095 0.86 +0.3
2,835,569 + SGL_RS15095 0.88 -0.2
2,835,754 + +0.4
2,835,789 + +1.2
2,835,797 - +0.8
2,835,812 + +0.2
2,836,125 - SGL_RS15100 0.18 +0.2
2,836,210 - SGL_RS15100 0.23 +0.3
2,836,270 + SGL_RS15100 0.27 -0.8
2,836,401 + SGL_RS15100 0.35 +0.3
2,836,428 - SGL_RS15100 0.36 -0.5
2,836,556 - SGL_RS15100 0.44 -0.4
2,836,557 + SGL_RS15100 0.44 -0.2
2,836,562 + SGL_RS15100 0.44 -0.5
2,836,606 - SGL_RS15100 0.47 -0.2
2,836,654 + SGL_RS15100 0.49 -0.2
2,836,694 - SGL_RS15100 0.52 +0.4
2,836,782 + SGL_RS15100 0.57 +0.1
2,836,798 + SGL_RS15100 0.58 +0.2
2,836,798 + SGL_RS15100 0.58 +0.7
2,836,798 + SGL_RS15100 0.58 -0.3
2,836,823 - SGL_RS15100 0.59 +0.4

Or see this region's nucleotide sequence