Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14425 and SGL_RS14430 overlap by 79 nucleotides SGL_RS14430 and SGL_RS14435 are separated by 2 nucleotides SGL_RS14435 and SGL_RS14440 are separated by 0 nucleotides SGL_RS14440 and SGL_RS14445 are separated by 5 nucleotides
SGL_RS14425: SGL_RS14425 - energy-coupling factor ABC transporter ATP-binding protein, at 2,691,528 to 2,692,382
_RS14425
SGL_RS14430: SGL_RS14430 - cobalt ECF transporter T component CbiQ, at 2,692,304 to 2,693,077
_RS14430
SGL_RS14435: SGL_RS14435 - cobalt transporter CbiM, at 2,693,080 to 2,693,724
_RS14435
SGL_RS14440: SGL_RS14440 - carboxypeptidase-like regulatory domain-containing protein, at 2,693,725 to 2,694,255
_RS14440
SGL_RS14445: SGL_RS14445 - hypothetical protein, at 2,694,261 to 2,695,145
_RS14445
Position (kb)
2693
2694 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2692.146 kb on + strand, within SGL_RS14425 at 2692.220 kb on - strand, within SGL_RS14425 at 2692.317 kb on - strand at 2692.364 kb on + strand at 2692.372 kb on - strand at 2692.440 kb on + strand, within SGL_RS14430 at 2692.440 kb on + strand, within SGL_RS14430 at 2692.468 kb on + strand, within SGL_RS14430 at 2692.476 kb on - strand, within SGL_RS14430 at 2692.476 kb on - strand, within SGL_RS14430 at 2692.543 kb on + strand, within SGL_RS14430 at 2692.551 kb on - strand, within SGL_RS14430 at 2692.564 kb on - strand, within SGL_RS14430 at 2692.645 kb on - strand, within SGL_RS14430 at 2692.970 kb on + strand, within SGL_RS14430 at 2693.046 kb on + strand at 2693.067 kb on + strand at 2693.437 kb on + strand, within SGL_RS14435 at 2693.506 kb on - strand, within SGL_RS14435 at 2693.737 kb on - strand at 2693.737 kb on - strand at 2693.920 kb on - strand, within SGL_RS14440 at 2693.953 kb on - strand, within SGL_RS14440 at 2694.412 kb on - strand, within SGL_RS14445 at 2694.423 kb on + strand, within SGL_RS14445 at 2694.628 kb on + strand, within SGL_RS14445 at 2694.678 kb on + strand, within SGL_RS14445 at 2694.678 kb on + strand, within SGL_RS14445 at 2694.686 kb on - strand, within SGL_RS14445
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 2,692,146 + SGL_RS14425 0.72 -2.0 2,692,220 - SGL_RS14425 0.81 -2.6 2,692,317 - +0.3 2,692,364 + -3.5 2,692,372 - -3.6 2,692,440 + SGL_RS14430 0.18 -2.7 2,692,440 + SGL_RS14430 0.18 -0.9 2,692,468 + SGL_RS14430 0.21 -1.9 2,692,476 - SGL_RS14430 0.22 -1.5 2,692,476 - SGL_RS14430 0.22 -1.3 2,692,543 + SGL_RS14430 0.31 -4.0 2,692,551 - SGL_RS14430 0.32 -3.2 2,692,564 - SGL_RS14430 0.34 -3.5 2,692,645 - SGL_RS14430 0.44 -3.0 2,692,970 + SGL_RS14430 0.86 -3.3 2,693,046 + -2.9 2,693,067 + -1.1 2,693,437 + SGL_RS14435 0.55 -2.3 2,693,506 - SGL_RS14435 0.66 -2.8 2,693,737 - -2.5 2,693,737 - -3.2 2,693,920 - SGL_RS14440 0.37 -1.2 2,693,953 - SGL_RS14440 0.43 -2.9 2,694,412 - SGL_RS14445 0.17 -3.6 2,694,423 + SGL_RS14445 0.18 -1.5 2,694,628 + SGL_RS14445 0.41 -1.7 2,694,678 + SGL_RS14445 0.47 -0.9 2,694,678 + SGL_RS14445 0.47 -1.9 2,694,686 - SGL_RS14445 0.48 -1.9
Or see this region's nucleotide sequence