Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS14330 and SGL_RS14335 overlap by 42 nucleotides SGL_RS14335 and SGL_RS14340 overlap by 8 nucleotides
SGL_RS14330: SGL_RS14330 - tRNA dihydrouridine synthase DusB, at 2,669,089 to 2,670,156
_RS14330
SGL_RS14335: SGL_RS14335 - 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase, at 2,670,115 to 2,671,902
_RS14335
SGL_RS14340: SGL_RS14340 - protein phosphatase 2C domain-containing protein, at 2,671,895 to 2,673,970
_RS14340
Position (kb)
2670
2671
2672 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 2669.296 kb on - strand, within SGL_RS14330 at 2669.445 kb on + strand, within SGL_RS14330 at 2669.469 kb on + strand, within SGL_RS14330 at 2669.469 kb on + strand, within SGL_RS14330 at 2669.473 kb on + strand, within SGL_RS14330 at 2669.530 kb on - strand, within SGL_RS14330 at 2669.709 kb on + strand, within SGL_RS14330 at 2669.709 kb on + strand, within SGL_RS14330 at 2669.712 kb on - strand, within SGL_RS14330 at 2669.851 kb on - strand, within SGL_RS14330 at 2670.092 kb on + strand at 2670.595 kb on - strand, within SGL_RS14335 at 2670.698 kb on - strand, within SGL_RS14335 at 2670.714 kb on - strand, within SGL_RS14335 at 2671.039 kb on + strand, within SGL_RS14335 at 2671.085 kb on + strand, within SGL_RS14335 at 2671.338 kb on - strand, within SGL_RS14335 at 2671.667 kb on + strand, within SGL_RS14335 at 2671.885 kb on - strand at 2671.885 kb on - strand at 2672.012 kb on - strand at 2672.077 kb on + strand at 2672.212 kb on + strand, within SGL_RS14340 at 2672.256 kb on - strand, within SGL_RS14340 at 2672.492 kb on - strand, within SGL_RS14340 at 2672.515 kb on - strand, within SGL_RS14340 at 2672.532 kb on + strand, within SGL_RS14340 at 2672.540 kb on - strand, within SGL_RS14340 at 2672.652 kb on - strand, within SGL_RS14340 at 2672.662 kb on + strand, within SGL_RS14340 at 2672.670 kb on - strand, within SGL_RS14340 at 2672.671 kb on - strand, within SGL_RS14340 at 2672.892 kb on + strand, within SGL_RS14340
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 2,669,296 - SGL_RS14330 0.19 +0.2 2,669,445 + SGL_RS14330 0.33 -0.0 2,669,469 + SGL_RS14330 0.36 -0.5 2,669,469 + SGL_RS14330 0.36 -0.3 2,669,473 + SGL_RS14330 0.36 +0.7 2,669,530 - SGL_RS14330 0.41 +0.1 2,669,709 + SGL_RS14330 0.58 -0.2 2,669,709 + SGL_RS14330 0.58 +0.0 2,669,712 - SGL_RS14330 0.58 -0.4 2,669,851 - SGL_RS14330 0.71 -0.1 2,670,092 + -0.8 2,670,595 - SGL_RS14335 0.27 -2.9 2,670,698 - SGL_RS14335 0.33 -1.9 2,670,714 - SGL_RS14335 0.34 -3.5 2,671,039 + SGL_RS14335 0.52 -1.7 2,671,085 + SGL_RS14335 0.54 -3.2 2,671,338 - SGL_RS14335 0.68 -3.7 2,671,667 + SGL_RS14335 0.87 -2.7 2,671,885 - -0.1 2,671,885 - -0.8 2,672,012 - -1.2 2,672,077 + -3.7 2,672,212 + SGL_RS14340 0.15 -4.6 2,672,256 - SGL_RS14340 0.17 -2.0 2,672,492 - SGL_RS14340 0.29 -0.3 2,672,515 - SGL_RS14340 0.30 -0.5 2,672,532 + SGL_RS14340 0.31 -1.9 2,672,540 - SGL_RS14340 0.31 -0.7 2,672,652 - SGL_RS14340 0.36 -0.8 2,672,662 + SGL_RS14340 0.37 -0.2 2,672,670 - SGL_RS14340 0.37 -1.2 2,672,671 - SGL_RS14340 0.37 -1.5 2,672,892 + SGL_RS14340 0.48 -0.3
Or see this region's nucleotide sequence