Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS13860 and SGL_RS13865 are separated by 229 nucleotides SGL_RS13865 and SGL_RS13870 are separated by 4 nucleotides SGL_RS13870 and SGL_RS13875 are separated by 64 nucleotides SGL_RS13875 and SGL_RS13880 are separated by 36 nucleotides
SGL_RS13860: SGL_RS13860 - acetolactate synthase small subunit, at 2,575,344 to 2,575,862
_RS13860
SGL_RS13865: SGL_RS13865 - DUF3285 domain-containing protein, at 2,576,092 to 2,576,280
_RS13865
SGL_RS13870: SGL_RS13870 - rRNA maturation RNase YbeY, at 2,576,285 to 2,576,824
_RS13870
SGL_RS13875: SGL_RS13875 - diacylglycerol kinase, at 2,576,889 to 2,577,416
_RS13875
SGL_RS13880: SGL_RS13880 - aminodeoxychorismate/anthranilate synthase component II, at 2,577,453 to 2,578,043
_RS13880
Position (kb)
2576
2577 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 2575.604 kb on + strand, within SGL_RS13860 at 2576.003 kb on - strand at 2576.178 kb on + strand, within SGL_RS13865 at 2576.180 kb on + strand, within SGL_RS13865 at 2576.186 kb on - strand, within SGL_RS13865 at 2576.188 kb on - strand, within SGL_RS13865 at 2576.336 kb on + strand at 2576.369 kb on - strand, within SGL_RS13870 at 2576.423 kb on - strand, within SGL_RS13870 at 2576.425 kb on - strand, within SGL_RS13870 at 2576.532 kb on - strand, within SGL_RS13870 at 2576.532 kb on - strand, within SGL_RS13870 at 2576.631 kb on + strand, within SGL_RS13870 at 2576.687 kb on + strand, within SGL_RS13870 at 2576.716 kb on - strand, within SGL_RS13870 at 2576.885 kb on - strand at 2577.411 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 2,575,604 + SGL_RS13860 0.50 -2.0 2,576,003 - +0.5 2,576,178 + SGL_RS13865 0.46 +0.3 2,576,180 + SGL_RS13865 0.47 +0.5 2,576,186 - SGL_RS13865 0.50 +0.3 2,576,188 - SGL_RS13865 0.51 +0.3 2,576,336 + -2.3 2,576,369 - SGL_RS13870 0.16 -0.8 2,576,423 - SGL_RS13870 0.26 -0.9 2,576,425 - SGL_RS13870 0.26 -1.5 2,576,532 - SGL_RS13870 0.46 +0.2 2,576,532 - SGL_RS13870 0.46 -1.8 2,576,631 + SGL_RS13870 0.64 -1.4 2,576,687 + SGL_RS13870 0.74 -2.2 2,576,716 - SGL_RS13870 0.80 -2.5 2,576,885 - -0.7 2,577,411 + -3.0
Or see this region's nucleotide sequence