Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS13170

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS13165 and SGL_RS13170 are separated by 90 nucleotidesSGL_RS13170 and SGL_RS13175 are separated by 145 nucleotidesSGL_RS13175 and SGL_RS13180 are separated by 200 nucleotides SGL_RS13165: SGL_RS13165 - flavin monoamine oxidase family protein, at 2,420,030 to 2,421,445 _RS13165 SGL_RS13170: SGL_RS13170 - histidine kinase, at 2,421,536 to 2,422,687 _RS13170 SGL_RS13175: SGL_RS13175 - GerMN domain-containing protein, at 2,422,833 to 2,423,420 _RS13175 SGL_RS13180: SGL_RS13180 - triose-phosphate isomerase, at 2,423,621 to 2,424,349 _RS13180 Position (kb) 2421 2422 2423Strain fitness (log2 ratio) -2 -1 0 1at 2420.537 kb on + strand, within SGL_RS13165at 2420.608 kb on + strand, within SGL_RS13165at 2420.727 kb on - strand, within SGL_RS13165at 2420.795 kb on + strand, within SGL_RS13165at 2420.803 kb on - strand, within SGL_RS13165at 2420.810 kb on - strand, within SGL_RS13165at 2420.823 kb on + strand, within SGL_RS13165at 2420.946 kb on + strand, within SGL_RS13165at 2421.017 kb on + strand, within SGL_RS13165at 2421.037 kb on + strand, within SGL_RS13165at 2421.045 kb on - strand, within SGL_RS13165at 2421.082 kb on + strand, within SGL_RS13165at 2421.096 kb on + strand, within SGL_RS13165at 2421.171 kb on - strand, within SGL_RS13165at 2421.320 kb on - strandat 2421.327 kb on + strandat 2421.447 kb on - strandat 2421.484 kb on + strandat 2421.643 kb on + strandat 2421.672 kb on + strand, within SGL_RS13170at 2421.679 kb on + strand, within SGL_RS13170at 2422.181 kb on - strand, within SGL_RS13170at 2422.183 kb on - strand, within SGL_RS13170at 2422.207 kb on - strand, within SGL_RS13170at 2422.231 kb on + strand, within SGL_RS13170at 2422.609 kb on - strandat 2422.727 kb on + strandat 2422.762 kb on + strandat 2422.804 kb on - strandat 2422.917 kb on + strand, within SGL_RS13175at 2423.019 kb on + strand, within SGL_RS13175at 2423.048 kb on + strand, within SGL_RS13175at 2423.090 kb on - strand, within SGL_RS13175at 2423.326 kb on - strand, within SGL_RS13175at 2423.381 kb on - strandat 2423.562 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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2,420,537 + SGL_RS13165 0.36 -0.3
2,420,608 + SGL_RS13165 0.41 -0.2
2,420,727 - SGL_RS13165 0.49 +0.7
2,420,795 + SGL_RS13165 0.54 -0.3
2,420,803 - SGL_RS13165 0.55 +0.7
2,420,810 - SGL_RS13165 0.55 -0.5
2,420,823 + SGL_RS13165 0.56 +0.1
2,420,946 + SGL_RS13165 0.65 -0.2
2,421,017 + SGL_RS13165 0.70 -0.0
2,421,037 + SGL_RS13165 0.71 +0.1
2,421,045 - SGL_RS13165 0.72 -0.1
2,421,082 + SGL_RS13165 0.74 +0.8
2,421,096 + SGL_RS13165 0.75 -0.1
2,421,171 - SGL_RS13165 0.81 +0.0
2,421,320 - -0.4
2,421,327 + +0.1
2,421,447 - +0.2
2,421,484 + +0.1
2,421,643 + -0.9
2,421,672 + SGL_RS13170 0.12 -1.4
2,421,679 + SGL_RS13170 0.12 -1.6
2,422,181 - SGL_RS13170 0.56 -0.6
2,422,183 - SGL_RS13170 0.56 -1.0
2,422,207 - SGL_RS13170 0.58 -2.5
2,422,231 + SGL_RS13170 0.60 -1.6
2,422,609 - -1.8
2,422,727 + -1.0
2,422,762 + -1.3
2,422,804 - -1.0
2,422,917 + SGL_RS13175 0.14 +0.2
2,423,019 + SGL_RS13175 0.32 -0.4
2,423,048 + SGL_RS13175 0.37 -0.3
2,423,090 - SGL_RS13175 0.44 +0.2
2,423,326 - SGL_RS13175 0.84 -0.4
2,423,381 - -0.6
2,423,562 - +0.2

Or see this region's nucleotide sequence