Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11530

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11520 and SGL_RS11525 are separated by 135 nucleotidesSGL_RS11525 and SGL_RS11530 are separated by 0 nucleotidesSGL_RS11530 and SGL_RS11535 are separated by 124 nucleotidesSGL_RS11535 and SGL_RS11540 are separated by 99 nucleotides SGL_RS11520: SGL_RS11520 - molybdopterin-synthase adenylyltransferase MoeB, at 2,040,280 to 2,041,458 _RS11520 SGL_RS11525: SGL_RS11525 - DUF2237 family protein, at 2,041,594 to 2,041,998 _RS11525 SGL_RS11530: SGL_RS11530 - RluA family pseudouridine synthase, at 2,041,999 to 2,042,982 _RS11530 SGL_RS11535: SGL_RS11535 - sugar transferase, at 2,043,107 to 2,043,838 _RS11535 SGL_RS11540: SGL_RS11540 - glycosyltransferase, at 2,043,938 to 2,045,074 _RS11540 Position (kb) 2041 2042 2043Strain fitness (log2 ratio) -2 -1 0 1at 2041.617 kb on + strandat 2041.850 kb on - strand, within SGL_RS11525at 2042.037 kb on - strandat 2042.055 kb on + strandat 2042.100 kb on + strand, within SGL_RS11530at 2042.109 kb on - strand, within SGL_RS11530at 2042.275 kb on + strand, within SGL_RS11530at 2042.355 kb on + strand, within SGL_RS11530at 2042.381 kb on - strand, within SGL_RS11530at 2042.514 kb on + strand, within SGL_RS11530at 2042.572 kb on + strand, within SGL_RS11530at 2042.814 kb on + strand, within SGL_RS11530at 2042.814 kb on + strand, within SGL_RS11530at 2042.840 kb on + strand, within SGL_RS11530at 2042.886 kb on + strandat 2042.888 kb on + strandat 2042.894 kb on - strandat 2043.024 kb on - strandat 2043.060 kb on - strandat 2043.060 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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2,041,617 + +0.6
2,041,850 - SGL_RS11525 0.63 -0.4
2,042,037 - -0.1
2,042,055 + -0.2
2,042,100 + SGL_RS11530 0.10 -1.3
2,042,109 - SGL_RS11530 0.11 -0.7
2,042,275 + SGL_RS11530 0.28 -0.8
2,042,355 + SGL_RS11530 0.36 -1.0
2,042,381 - SGL_RS11530 0.39 -2.2
2,042,514 + SGL_RS11530 0.52 -0.6
2,042,572 + SGL_RS11530 0.58 -0.8
2,042,814 + SGL_RS11530 0.83 -1.4
2,042,814 + SGL_RS11530 0.83 -1.7
2,042,840 + SGL_RS11530 0.85 -1.3
2,042,886 + -0.7
2,042,888 + -0.9
2,042,894 - -0.6
2,043,024 - -0.1
2,043,060 - -0.2
2,043,060 - +0.1

Or see this region's nucleotide sequence