Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11240

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11235 and SGL_RS11240 are separated by 577 nucleotidesSGL_RS11240 and SGL_RS11245 are separated by 34 nucleotidesSGL_RS11245 and SGL_RS11250 are separated by 32 nucleotides SGL_RS11235: SGL_RS11235 - hybrid sensor histidine kinase/response regulator, at 1,980,365 to 1,981,471 _RS11235 SGL_RS11240: SGL_RS11240 - photosystem I reaction center subunit IV, at 1,982,049 to 1,982,273 _RS11240 SGL_RS11245: SGL_RS11245 - DNA-formamidopyrimidine glycosylase, at 1,982,308 to 1,983,171 _RS11245 SGL_RS11250: SGL_RS11250 - NUDIX domain-containing protein, at 1,983,204 to 1,983,932 _RS11250 Position (kb) 1982 1983Strain fitness (log2 ratio) -3 -2 -1 0 1at 1981.131 kb on + strand, within SGL_RS11235at 1981.144 kb on - strand, within SGL_RS11235at 1981.206 kb on + strand, within SGL_RS11235at 1981.264 kb on - strand, within SGL_RS11235at 1981.358 kb on - strand, within SGL_RS11235at 1981.407 kb on - strandat 1981.417 kb on - strandat 1981.635 kb on + strandat 1981.794 kb on - strandat 1981.877 kb on + strandat 1981.926 kb on - strandat 1982.067 kb on + strandat 1982.214 kb on - strand, within SGL_RS11240at 1982.368 kb on - strandat 1982.553 kb on + strand, within SGL_RS11245at 1982.597 kb on + strand, within SGL_RS11245at 1982.617 kb on + strand, within SGL_RS11245at 1982.625 kb on - strand, within SGL_RS11245at 1982.649 kb on - strand, within SGL_RS11245at 1982.731 kb on - strand, within SGL_RS11245at 1982.930 kb on + strand, within SGL_RS11245at 1982.956 kb on - strand, within SGL_RS11245at 1982.998 kb on - strand, within SGL_RS11245at 1983.062 kb on - strand, within SGL_RS11245at 1983.089 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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1,981,131 + SGL_RS11235 0.69 -2.7
1,981,144 - SGL_RS11235 0.70 -1.8
1,981,206 + SGL_RS11235 0.76 -1.8
1,981,264 - SGL_RS11235 0.81 -1.8
1,981,358 - SGL_RS11235 0.90 -2.0
1,981,407 - -3.2
1,981,417 - -2.5
1,981,635 + -0.5
1,981,794 - +0.2
1,981,877 + -0.3
1,981,926 - -0.6
1,982,067 + -0.7
1,982,214 - SGL_RS11240 0.73 -1.1
1,982,368 - -0.3
1,982,553 + SGL_RS11245 0.28 -0.3
1,982,597 + SGL_RS11245 0.33 -0.1
1,982,617 + SGL_RS11245 0.36 -0.2
1,982,625 - SGL_RS11245 0.37 -0.3
1,982,649 - SGL_RS11245 0.39 +0.3
1,982,731 - SGL_RS11245 0.49 -0.2
1,982,930 + SGL_RS11245 0.72 -0.1
1,982,956 - SGL_RS11245 0.75 +0.1
1,982,998 - SGL_RS11245 0.80 +0.2
1,983,062 - SGL_RS11245 0.87 -0.5
1,983,089 + -0.2

Or see this region's nucleotide sequence