Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS11235

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS11230 and SGL_RS11235 are separated by 171 nucleotidesSGL_RS11235 and SGL_RS11240 are separated by 577 nucleotidesSGL_RS11240 and SGL_RS11245 are separated by 34 nucleotides SGL_RS11230: SGL_RS11230 - type 2 isopentenyl-diphosphate Delta-isomerase, at 1,979,144 to 1,980,193 _RS11230 SGL_RS11235: SGL_RS11235 - hybrid sensor histidine kinase/response regulator, at 1,980,365 to 1,981,471 _RS11235 SGL_RS11240: SGL_RS11240 - photosystem I reaction center subunit IV, at 1,982,049 to 1,982,273 _RS11240 SGL_RS11245: SGL_RS11245 - DNA-formamidopyrimidine glycosylase, at 1,982,308 to 1,983,171 _RS11245 Position (kb) 1980 1981 1982Strain fitness (log2 ratio) -3 -2 -1 0 1at 1979.447 kb on + strand, within SGL_RS11230at 1979.468 kb on + strand, within SGL_RS11230at 1979.488 kb on - strand, within SGL_RS11230at 1979.499 kb on - strand, within SGL_RS11230at 1979.499 kb on - strand, within SGL_RS11230at 1979.648 kb on - strand, within SGL_RS11230at 1979.670 kb on + strand, within SGL_RS11230at 1979.860 kb on + strand, within SGL_RS11230at 1980.148 kb on + strandat 1980.158 kb on + strandat 1980.168 kb on + strandat 1980.282 kb on - strandat 1980.386 kb on + strandat 1980.484 kb on + strand, within SGL_RS11235at 1980.492 kb on - strand, within SGL_RS11235at 1980.531 kb on - strand, within SGL_RS11235at 1980.562 kb on + strand, within SGL_RS11235at 1980.641 kb on - strand, within SGL_RS11235at 1980.650 kb on - strand, within SGL_RS11235at 1980.792 kb on + strand, within SGL_RS11235at 1980.817 kb on - strand, within SGL_RS11235at 1980.824 kb on + strand, within SGL_RS11235at 1980.842 kb on - strand, within SGL_RS11235at 1980.967 kb on - strand, within SGL_RS11235at 1981.131 kb on + strand, within SGL_RS11235at 1981.144 kb on - strand, within SGL_RS11235at 1981.206 kb on + strand, within SGL_RS11235at 1981.264 kb on - strand, within SGL_RS11235at 1981.358 kb on - strand, within SGL_RS11235at 1981.407 kb on - strandat 1981.417 kb on - strandat 1981.635 kb on + strandat 1981.794 kb on - strandat 1981.877 kb on + strandat 1981.926 kb on - strandat 1982.067 kb on + strandat 1982.214 kb on - strand, within SGL_RS11240at 1982.368 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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1,979,447 + SGL_RS11230 0.29 -0.1
1,979,468 + SGL_RS11230 0.31 -2.5
1,979,488 - SGL_RS11230 0.33 +0.0
1,979,499 - SGL_RS11230 0.34 -0.0
1,979,499 - SGL_RS11230 0.34 +0.1
1,979,648 - SGL_RS11230 0.48 -0.1
1,979,670 + SGL_RS11230 0.50 -0.2
1,979,860 + SGL_RS11230 0.68 +0.4
1,980,148 + -0.0
1,980,158 + -0.7
1,980,168 + -0.1
1,980,282 - -0.0
1,980,386 + -2.6
1,980,484 + SGL_RS11235 0.11 -1.7
1,980,492 - SGL_RS11235 0.11 -1.6
1,980,531 - SGL_RS11235 0.15 -1.9
1,980,562 + SGL_RS11235 0.18 -3.0
1,980,641 - SGL_RS11235 0.25 -2.3
1,980,650 - SGL_RS11235 0.26 -1.9
1,980,792 + SGL_RS11235 0.39 -2.0
1,980,817 - SGL_RS11235 0.41 -2.6
1,980,824 + SGL_RS11235 0.41 -2.5
1,980,842 - SGL_RS11235 0.43 -2.1
1,980,967 - SGL_RS11235 0.54 -2.5
1,981,131 + SGL_RS11235 0.69 -2.7
1,981,144 - SGL_RS11235 0.70 -1.8
1,981,206 + SGL_RS11235 0.76 -1.8
1,981,264 - SGL_RS11235 0.81 -1.8
1,981,358 - SGL_RS11235 0.90 -2.0
1,981,407 - -3.2
1,981,417 - -2.5
1,981,635 + -0.5
1,981,794 - +0.2
1,981,877 + -0.3
1,981,926 - -0.6
1,982,067 + -0.7
1,982,214 - SGL_RS11240 0.73 -1.1
1,982,368 - -0.3

Or see this region's nucleotide sequence