Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10410

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10405 and SGL_RS10410 are separated by 183 nucleotidesSGL_RS10410 and SGL_RS10415 are separated by 244 nucleotides SGL_RS10405: SGL_RS10405 - ATP-binding protein, at 1,808,922 to 1,810,946 _RS10405 SGL_RS10410: SGL_RS10410 - response regulator, at 1,811,130 to 1,811,501 _RS10410 SGL_RS10415: SGL_RS10415 - SpoIIE family protein phosphatase, at 1,811,746 to 1,813,557 _RS10415 Position (kb) 1811 1812Strain fitness (log2 ratio) -1 0 1at 1810.844 kb on - strandat 1811.084 kb on + strandat 1811.084 kb on + strandat 1811.211 kb on + strand, within SGL_RS10410at 1811.211 kb on + strand, within SGL_RS10410at 1811.219 kb on - strand, within SGL_RS10410at 1811.220 kb on - strand, within SGL_RS10410at 1811.246 kb on + strand, within SGL_RS10410at 1811.246 kb on + strand, within SGL_RS10410at 1811.246 kb on + strand, within SGL_RS10410at 1811.250 kb on - strand, within SGL_RS10410at 1811.623 kb on + strandat 1812.391 kb on - strand, within SGL_RS10415at 1812.414 kb on + strand, within SGL_RS10415at 1812.423 kb on - strand, within SGL_RS10415at 1812.468 kb on + strand, within SGL_RS10415

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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1,810,844 - -0.1
1,811,084 + -0.4
1,811,084 + +0.6
1,811,211 + SGL_RS10410 0.22 -0.1
1,811,211 + SGL_RS10410 0.22 +0.1
1,811,219 - SGL_RS10410 0.24 -0.0
1,811,220 - SGL_RS10410 0.24 +0.3
1,811,246 + SGL_RS10410 0.31 -0.2
1,811,246 + SGL_RS10410 0.31 -0.1
1,811,246 + SGL_RS10410 0.31 -0.2
1,811,250 - SGL_RS10410 0.32 -0.4
1,811,623 + -0.3
1,812,391 - SGL_RS10415 0.36 -0.0
1,812,414 + SGL_RS10415 0.37 -0.2
1,812,423 - SGL_RS10415 0.37 +0.1
1,812,468 + SGL_RS10415 0.40 +0.0

Or see this region's nucleotide sequence