Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS10295

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS10290 and SGL_RS10295 overlap by 4 nucleotidesSGL_RS10295 and SGL_RS10300 are separated by 86 nucleotidesSGL_RS10300 and SGL_RS10305 are separated by 182 nucleotides SGL_RS10290: SGL_RS10290 - M48 family metalloprotease, at 1,781,209 to 1,782,060 _RS10290 SGL_RS10295: SGL_RS10295 - GAF domain-containing protein, at 1,782,057 to 1,783,355 _RS10295 SGL_RS10300: SGL_RS10300 - hypothetical protein, at 1,783,442 to 1,783,672 _RS10300 SGL_RS10305: SGL_RS10305 - PIN/TRAM domain-containing protein, at 1,783,855 to 1,784,934 _RS10305 Position (kb) 1782 1783 1784Strain fitness (log2 ratio) -2 -1 0 1at 1781.498 kb on - strand, within SGL_RS10290at 1781.511 kb on + strand, within SGL_RS10290at 1781.519 kb on - strand, within SGL_RS10290at 1781.697 kb on - strand, within SGL_RS10290at 1781.776 kb on - strand, within SGL_RS10290at 1781.776 kb on - strand, within SGL_RS10290at 1781.778 kb on + strand, within SGL_RS10290at 1781.842 kb on + strand, within SGL_RS10290at 1781.851 kb on - strand, within SGL_RS10290at 1781.921 kb on + strand, within SGL_RS10290at 1781.933 kb on + strand, within SGL_RS10290at 1781.948 kb on + strand, within SGL_RS10290at 1781.990 kb on - strandat 1782.354 kb on + strand, within SGL_RS10295at 1782.364 kb on - strand, within SGL_RS10295at 1782.411 kb on + strand, within SGL_RS10295at 1782.563 kb on - strand, within SGL_RS10295at 1782.786 kb on + strand, within SGL_RS10295at 1782.821 kb on - strand, within SGL_RS10295at 1782.840 kb on + strand, within SGL_RS10295at 1782.967 kb on - strand, within SGL_RS10295at 1782.987 kb on + strand, within SGL_RS10295at 1783.008 kb on - strand, within SGL_RS10295at 1783.193 kb on + strand, within SGL_RS10295at 1783.364 kb on + strandat 1783.377 kb on + strandat 1783.574 kb on + strand, within SGL_RS10300at 1783.910 kb on - strandat 1784.226 kb on + strand, within SGL_RS10305at 1784.249 kb on + strand, within SGL_RS10305at 1784.318 kb on + strand, within SGL_RS10305

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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1,781,498 - SGL_RS10290 0.34 -0.0
1,781,511 + SGL_RS10290 0.35 +0.2
1,781,519 - SGL_RS10290 0.36 -0.2
1,781,697 - SGL_RS10290 0.57 -0.2
1,781,776 - SGL_RS10290 0.67 -0.6
1,781,776 - SGL_RS10290 0.67 -0.5
1,781,778 + SGL_RS10290 0.67 -0.1
1,781,842 + SGL_RS10290 0.74 -0.2
1,781,851 - SGL_RS10290 0.75 -0.3
1,781,921 + SGL_RS10290 0.84 +0.3
1,781,933 + SGL_RS10290 0.85 +0.2
1,781,948 + SGL_RS10290 0.87 +0.1
1,781,990 - -0.1
1,782,354 + SGL_RS10295 0.23 -1.1
1,782,364 - SGL_RS10295 0.24 -0.6
1,782,411 + SGL_RS10295 0.27 -2.2
1,782,563 - SGL_RS10295 0.39 -0.2
1,782,786 + SGL_RS10295 0.56 -1.8
1,782,821 - SGL_RS10295 0.59 +0.1
1,782,840 + SGL_RS10295 0.60 -1.6
1,782,967 - SGL_RS10295 0.70 -0.7
1,782,987 + SGL_RS10295 0.72 -1.3
1,783,008 - SGL_RS10295 0.73 -1.2
1,783,193 + SGL_RS10295 0.87 -2.3
1,783,364 + -0.9
1,783,377 + -1.3
1,783,574 + SGL_RS10300 0.57 -1.7
1,783,910 - -2.0
1,784,226 + SGL_RS10305 0.34 -1.2
1,784,249 + SGL_RS10305 0.36 -1.3
1,784,318 + SGL_RS10305 0.43 -0.8

Or see this region's nucleotide sequence