Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09965 and SGL_RS09970 are separated by 16 nucleotides SGL_RS09970 and SGL_RS09975 are separated by 30 nucleotides SGL_RS09975 and SGL_RS09980 are separated by 92 nucleotides SGL_RS09980 and SGL_RS09985 are separated by 102 nucleotides
SGL_RS09965: SGL_RS09965 - GTP-binding protein, at 1,716,932 to 1,718,293
_RS09965
SGL_RS09970: SGL_RS09970 - DUF29 domain-containing protein, at 1,718,310 to 1,718,789
_RS09970
SGL_RS09975: SGL_RS09975 - DUF29 domain-containing protein, at 1,718,820 to 1,719,263
_RS09975
SGL_RS09980: SGL_RS09980 - ssl1498 family light-harvesting-like protein, at 1,719,356 to 1,719,541
_RS09980
SGL_RS09985: SGL_RS09985 - cation diffusion facilitator family transporter, at 1,719,644 to 1,720,576
_RS09985
Position (kb) 1718
1719
1720 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 1718.275 kb on - strand at 1718.361 kb on + strand, within SGL_RS09970 at 1718.408 kb on - strand, within SGL_RS09970 at 1718.475 kb on - strand, within SGL_RS09970 at 1718.722 kb on + strand, within SGL_RS09970 at 1718.782 kb on - strand at 1718.866 kb on + strand, within SGL_RS09975 at 1718.919 kb on + strand, within SGL_RS09975 at 1718.933 kb on - strand, within SGL_RS09975 at 1718.980 kb on - strand, within SGL_RS09975 at 1718.987 kb on - strand, within SGL_RS09975 at 1719.015 kb on - strand, within SGL_RS09975 at 1719.056 kb on - strand, within SGL_RS09975 at 1719.608 kb on - strand at 1719.713 kb on - strand at 1719.717 kb on + strand at 1719.724 kb on + strand at 1719.750 kb on - strand, within SGL_RS09985 at 1719.793 kb on + strand, within SGL_RS09985 at 1719.794 kb on + strand, within SGL_RS09985 at 1719.801 kb on - strand, within SGL_RS09985 at 1719.801 kb on - strand, within SGL_RS09985 at 1719.803 kb on + strand, within SGL_RS09985 at 1719.858 kb on + strand, within SGL_RS09985 at 1719.946 kb on - strand, within SGL_RS09985 at 1719.974 kb on + strand, within SGL_RS09985 at 1720.008 kb on - strand, within SGL_RS09985 at 1720.015 kb on + strand, within SGL_RS09985 at 1720.053 kb on - strand, within SGL_RS09985 at 1720.157 kb on + strand, within SGL_RS09985 at 1720.197 kb on + strand, within SGL_RS09985 at 1720.197 kb on + strand, within SGL_RS09985 at 1720.202 kb on + strand, within SGL_RS09985 at 1720.202 kb on + strand, within SGL_RS09985 at 1720.210 kb on - strand, within SGL_RS09985
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 1,718,275 - -3.2 1,718,361 + SGL_RS09970 0.11 -2.0 1,718,408 - SGL_RS09970 0.20 -1.5 1,718,475 - SGL_RS09970 0.34 -0.4 1,718,722 + SGL_RS09970 0.86 -3.9 1,718,782 - -1.9 1,718,866 + SGL_RS09975 0.10 -3.1 1,718,919 + SGL_RS09975 0.22 -2.1 1,718,933 - SGL_RS09975 0.25 -1.2 1,718,980 - SGL_RS09975 0.36 -0.9 1,718,987 - SGL_RS09975 0.38 -0.1 1,719,015 - SGL_RS09975 0.44 -0.2 1,719,056 - SGL_RS09975 0.53 +0.2 1,719,608 - +0.1 1,719,713 - -0.8 1,719,717 + +0.1 1,719,724 + -0.0 1,719,750 - SGL_RS09985 0.11 +0.9 1,719,793 + SGL_RS09985 0.16 -0.1 1,719,794 + SGL_RS09985 0.16 -0.5 1,719,801 - SGL_RS09985 0.17 +0.5 1,719,801 - SGL_RS09985 0.17 +0.1 1,719,803 + SGL_RS09985 0.17 -0.5 1,719,858 + SGL_RS09985 0.23 +0.4 1,719,946 - SGL_RS09985 0.32 +0.5 1,719,974 + SGL_RS09985 0.35 -0.4 1,720,008 - SGL_RS09985 0.39 +0.0 1,720,015 + SGL_RS09985 0.40 +0.0 1,720,053 - SGL_RS09985 0.44 +0.2 1,720,157 + SGL_RS09985 0.55 -0.2 1,720,197 + SGL_RS09985 0.59 +0.4 1,720,197 + SGL_RS09985 0.59 +0.1 1,720,202 + SGL_RS09985 0.60 +0.1 1,720,202 + SGL_RS09985 0.60 +0.3 1,720,210 - SGL_RS09985 0.61 -0.5
Or see this region's nucleotide sequence