Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS09700

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS09695 and SGL_RS19870 overlap by 27 nucleotidesSGL_RS19870 and SGL_RS09700 are separated by 47 nucleotidesSGL_RS09700 and SGL_RS09705 are separated by 154 nucleotides SGL_RS09695: SGL_RS09695 - hybrid sensor histidine kinase/response regulator, at 1,663,554 to 1,664,633 _RS09695 SGL_RS19870: SGL_RS19870 - hypothetical protein, at 1,664,607 to 1,664,750 _RS19870 SGL_RS09700: SGL_RS09700 - response regulator, at 1,664,798 to 1,666,777 _RS09700 SGL_RS09705: SGL_RS09705 - F0F1 ATP synthase subunit beta, at 1,666,932 to 1,668,383 _RS09705 Position (kb) 1664 1665 1666 1667Strain fitness (log2 ratio) -3 -2 -1 0 1at 1663.829 kb on + strand, within SGL_RS09695at 1663.839 kb on + strand, within SGL_RS09695at 1664.090 kb on - strand, within SGL_RS09695at 1664.196 kb on + strand, within SGL_RS09695at 1664.200 kb on - strand, within SGL_RS09695at 1664.212 kb on + strand, within SGL_RS09695at 1664.242 kb on - strand, within SGL_RS09695at 1664.419 kb on + strand, within SGL_RS09695at 1664.622 kb on - strandat 1664.873 kb on - strandat 1665.005 kb on - strand, within SGL_RS09700at 1665.023 kb on - strand, within SGL_RS09700at 1665.039 kb on + strand, within SGL_RS09700at 1665.053 kb on - strand, within SGL_RS09700at 1665.087 kb on + strand, within SGL_RS09700at 1665.089 kb on - strand, within SGL_RS09700at 1665.094 kb on - strand, within SGL_RS09700at 1665.211 kb on + strand, within SGL_RS09700at 1665.335 kb on + strand, within SGL_RS09700at 1665.385 kb on - strand, within SGL_RS09700at 1665.385 kb on - strand, within SGL_RS09700at 1665.411 kb on - strand, within SGL_RS09700at 1665.425 kb on + strand, within SGL_RS09700at 1665.425 kb on + strand, within SGL_RS09700at 1665.566 kb on - strand, within SGL_RS09700at 1665.593 kb on - strand, within SGL_RS09700at 1665.619 kb on + strand, within SGL_RS09700at 1665.619 kb on + strand, within SGL_RS09700at 1665.619 kb on + strand, within SGL_RS09700at 1665.619 kb on + strand, within SGL_RS09700at 1665.619 kb on + strand, within SGL_RS09700at 1665.627 kb on - strand, within SGL_RS09700at 1665.627 kb on - strand, within SGL_RS09700at 1665.627 kb on - strand, within SGL_RS09700at 1665.627 kb on - strand, within SGL_RS09700at 1665.672 kb on + strand, within SGL_RS09700at 1665.752 kb on + strand, within SGL_RS09700at 1665.760 kb on - strand, within SGL_RS09700at 1665.760 kb on - strand, within SGL_RS09700at 1665.793 kb on + strand, within SGL_RS09700at 1665.809 kb on + strand, within SGL_RS09700at 1665.879 kb on + strand, within SGL_RS09700at 1665.879 kb on + strand, within SGL_RS09700at 1665.879 kb on + strand, within SGL_RS09700at 1665.887 kb on - strand, within SGL_RS09700at 1665.887 kb on - strand, within SGL_RS09700at 1665.887 kb on - strand, within SGL_RS09700at 1665.906 kb on - strand, within SGL_RS09700at 1665.923 kb on - strand, within SGL_RS09700at 1666.011 kb on + strand, within SGL_RS09700at 1666.068 kb on - strand, within SGL_RS09700at 1666.078 kb on - strand, within SGL_RS09700at 1666.101 kb on - strand, within SGL_RS09700at 1666.171 kb on - strand, within SGL_RS09700at 1666.183 kb on - strand, within SGL_RS09700at 1666.194 kb on - strand, within SGL_RS09700at 1666.209 kb on + strand, within SGL_RS09700at 1666.263 kb on - strand, within SGL_RS09700at 1666.263 kb on - strand, within SGL_RS09700at 1666.277 kb on + strand, within SGL_RS09700at 1666.280 kb on - strand, within SGL_RS09700at 1666.319 kb on + strand, within SGL_RS09700at 1666.400 kb on - strand, within SGL_RS09700at 1666.508 kb on + strand, within SGL_RS09700at 1666.541 kb on - strand, within SGL_RS09700at 1666.598 kb on - strandat 1666.659 kb on + strandat 1666.667 kb on - strandat 1666.709 kb on - strandat 1666.827 kb on - strandat 1666.827 kb on - strandat 1666.837 kb on - strandat 1666.853 kb on + strandat 1666.853 kb on + strandat 1666.853 kb on + strandat 1666.861 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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1,663,829 + SGL_RS09695 0.25 -0.5
1,663,839 + SGL_RS09695 0.26 -1.2
1,664,090 - SGL_RS09695 0.50 +0.0
1,664,196 + SGL_RS09695 0.59 -1.5
1,664,200 - SGL_RS09695 0.60 -0.2
1,664,212 + SGL_RS09695 0.61 -1.1
1,664,242 - SGL_RS09695 0.64 -0.5
1,664,419 + SGL_RS09695 0.80 -1.1
1,664,622 - -0.4
1,664,873 - -0.8
1,665,005 - SGL_RS09700 0.10 -1.2
1,665,023 - SGL_RS09700 0.11 -0.8
1,665,039 + SGL_RS09700 0.12 -2.1
1,665,053 - SGL_RS09700 0.13 -0.8
1,665,087 + SGL_RS09700 0.15 -2.3
1,665,089 - SGL_RS09700 0.15 -2.5
1,665,094 - SGL_RS09700 0.15 -2.4
1,665,211 + SGL_RS09700 0.21 -0.8
1,665,335 + SGL_RS09700 0.27 -1.2
1,665,385 - SGL_RS09700 0.30 -1.6
1,665,385 - SGL_RS09700 0.30 -0.9
1,665,411 - SGL_RS09700 0.31 -1.8
1,665,425 + SGL_RS09700 0.32 -1.8
1,665,425 + SGL_RS09700 0.32 -1.9
1,665,566 - SGL_RS09700 0.39 -1.0
1,665,593 - SGL_RS09700 0.40 -1.5
1,665,619 + SGL_RS09700 0.41 -3.0
1,665,619 + SGL_RS09700 0.41 -1.5
1,665,619 + SGL_RS09700 0.41 -1.0
1,665,619 + SGL_RS09700 0.41 -0.9
1,665,619 + SGL_RS09700 0.41 -3.3
1,665,627 - SGL_RS09700 0.42 -1.5
1,665,627 - SGL_RS09700 0.42 -2.0
1,665,627 - SGL_RS09700 0.42 -2.0
1,665,627 - SGL_RS09700 0.42 -1.0
1,665,672 + SGL_RS09700 0.44 -2.1
1,665,752 + SGL_RS09700 0.48 -0.4
1,665,760 - SGL_RS09700 0.49 -1.8
1,665,760 - SGL_RS09700 0.49 -1.6
1,665,793 + SGL_RS09700 0.50 -1.8
1,665,809 + SGL_RS09700 0.51 -1.7
1,665,879 + SGL_RS09700 0.55 -1.0
1,665,879 + SGL_RS09700 0.55 -1.8
1,665,879 + SGL_RS09700 0.55 -1.2
1,665,887 - SGL_RS09700 0.55 -1.7
1,665,887 - SGL_RS09700 0.55 -1.3
1,665,887 - SGL_RS09700 0.55 -1.9
1,665,906 - SGL_RS09700 0.56 -0.8
1,665,923 - SGL_RS09700 0.57 -1.4
1,666,011 + SGL_RS09700 0.61 -2.2
1,666,068 - SGL_RS09700 0.64 -2.3
1,666,078 - SGL_RS09700 0.65 -2.1
1,666,101 - SGL_RS09700 0.66 -1.9
1,666,171 - SGL_RS09700 0.69 -1.5
1,666,183 - SGL_RS09700 0.70 -0.4
1,666,194 - SGL_RS09700 0.71 -1.3
1,666,209 + SGL_RS09700 0.71 -2.0
1,666,263 - SGL_RS09700 0.74 -2.0
1,666,263 - SGL_RS09700 0.74 -0.5
1,666,277 + SGL_RS09700 0.75 -1.9
1,666,280 - SGL_RS09700 0.75 -1.8
1,666,319 + SGL_RS09700 0.77 -1.5
1,666,400 - SGL_RS09700 0.81 -2.0
1,666,508 + SGL_RS09700 0.86 -1.7
1,666,541 - SGL_RS09700 0.88 -1.5
1,666,598 - -1.2
1,666,659 + -1.5
1,666,667 - -1.7
1,666,709 - -1.8
1,666,827 - -1.2
1,666,827 - -1.3
1,666,837 - -1.9
1,666,853 + -1.7
1,666,853 + -1.3
1,666,853 + -1.5
1,666,861 - -1.4

Or see this region's nucleotide sequence