Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09690 and SGL_RS09695 are separated by 51 nucleotides SGL_RS09695 and SGL_RS19870 overlap by 27 nucleotides SGL_RS19870 and SGL_RS09700 are separated by 47 nucleotides
SGL_RS09690: SGL_RS09690 - glycosyltransferase family 1 protein, at 1,662,306 to 1,663,502
_RS09690
SGL_RS09695: SGL_RS09695 - hybrid sensor histidine kinase/response regulator, at 1,663,554 to 1,664,633
_RS09695
SGL_RS19870: SGL_RS19870 - hypothetical protein, at 1,664,607 to 1,664,750
_RS19870
SGL_RS09700: SGL_RS09700 - response regulator, at 1,664,798 to 1,666,777
_RS09700
Position (kb)
1663
1664
1665 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 1663.522 kb on + strand at 1663.618 kb on - strand at 1663.670 kb on + strand, within SGL_RS09695 at 1663.700 kb on + strand, within SGL_RS09695 at 1663.787 kb on + strand, within SGL_RS09695 at 1663.790 kb on - strand, within SGL_RS09695 at 1663.796 kb on - strand, within SGL_RS09695 at 1663.829 kb on + strand, within SGL_RS09695 at 1663.839 kb on + strand, within SGL_RS09695 at 1664.090 kb on - strand, within SGL_RS09695 at 1664.196 kb on + strand, within SGL_RS09695 at 1664.200 kb on - strand, within SGL_RS09695 at 1664.212 kb on + strand, within SGL_RS09695 at 1664.242 kb on - strand, within SGL_RS09695 at 1664.419 kb on + strand, within SGL_RS09695 at 1664.622 kb on - strand at 1664.873 kb on - strand at 1665.005 kb on - strand, within SGL_RS09700 at 1665.023 kb on - strand, within SGL_RS09700 at 1665.039 kb on + strand, within SGL_RS09700 at 1665.053 kb on - strand, within SGL_RS09700 at 1665.087 kb on + strand, within SGL_RS09700 at 1665.089 kb on - strand, within SGL_RS09700 at 1665.094 kb on - strand, within SGL_RS09700 at 1665.211 kb on + strand, within SGL_RS09700 at 1665.335 kb on + strand, within SGL_RS09700 at 1665.385 kb on - strand, within SGL_RS09700 at 1665.385 kb on - strand, within SGL_RS09700 at 1665.411 kb on - strand, within SGL_RS09700 at 1665.425 kb on + strand, within SGL_RS09700 at 1665.425 kb on + strand, within SGL_RS09700 at 1665.566 kb on - strand, within SGL_RS09700 at 1665.593 kb on - strand, within SGL_RS09700 at 1665.619 kb on + strand, within SGL_RS09700 at 1665.619 kb on + strand, within SGL_RS09700 at 1665.619 kb on + strand, within SGL_RS09700 at 1665.619 kb on + strand, within SGL_RS09700 at 1665.619 kb on + strand, within SGL_RS09700 at 1665.627 kb on - strand, within SGL_RS09700 at 1665.627 kb on - strand, within SGL_RS09700 at 1665.627 kb on - strand, within SGL_RS09700 at 1665.627 kb on - strand, within SGL_RS09700
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 1,663,522 + -0.0 1,663,618 - -1.0 1,663,670 + SGL_RS09695 0.11 -1.3 1,663,700 + SGL_RS09695 0.14 -2.7 1,663,787 + SGL_RS09695 0.22 -2.0 1,663,790 - SGL_RS09695 0.22 -1.2 1,663,796 - SGL_RS09695 0.22 -1.7 1,663,829 + SGL_RS09695 0.25 -0.5 1,663,839 + SGL_RS09695 0.26 -1.2 1,664,090 - SGL_RS09695 0.50 +0.0 1,664,196 + SGL_RS09695 0.59 -1.5 1,664,200 - SGL_RS09695 0.60 -0.2 1,664,212 + SGL_RS09695 0.61 -1.1 1,664,242 - SGL_RS09695 0.64 -0.5 1,664,419 + SGL_RS09695 0.80 -1.1 1,664,622 - -0.4 1,664,873 - -0.8 1,665,005 - SGL_RS09700 0.10 -1.2 1,665,023 - SGL_RS09700 0.11 -0.8 1,665,039 + SGL_RS09700 0.12 -2.1 1,665,053 - SGL_RS09700 0.13 -0.8 1,665,087 + SGL_RS09700 0.15 -2.3 1,665,089 - SGL_RS09700 0.15 -2.5 1,665,094 - SGL_RS09700 0.15 -2.4 1,665,211 + SGL_RS09700 0.21 -0.8 1,665,335 + SGL_RS09700 0.27 -1.2 1,665,385 - SGL_RS09700 0.30 -1.6 1,665,385 - SGL_RS09700 0.30 -0.9 1,665,411 - SGL_RS09700 0.31 -1.8 1,665,425 + SGL_RS09700 0.32 -1.8 1,665,425 + SGL_RS09700 0.32 -1.9 1,665,566 - SGL_RS09700 0.39 -1.0 1,665,593 - SGL_RS09700 0.40 -1.5 1,665,619 + SGL_RS09700 0.41 -3.0 1,665,619 + SGL_RS09700 0.41 -1.5 1,665,619 + SGL_RS09700 0.41 -1.0 1,665,619 + SGL_RS09700 0.41 -0.9 1,665,619 + SGL_RS09700 0.41 -3.3 1,665,627 - SGL_RS09700 0.42 -1.5 1,665,627 - SGL_RS09700 0.42 -2.0 1,665,627 - SGL_RS09700 0.42 -2.0 1,665,627 - SGL_RS09700 0.42 -1.0
Or see this region's nucleotide sequence