Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS09295 and SGL_RS09305 are separated by 553 nucleotides SGL_RS09305 and SGL_RS09310 are separated by 118 nucleotides
SGL_RS09295: SGL_RS09295 - alpha/beta hydrolase, at 1,590,496 to 1,592,364
_RS09295
SGL_RS09305: SGL_RS09305 - adenosyl-hopene transferase HpnH, at 1,592,918 to 1,594,000
_RS09305
SGL_RS09310: SGL_RS09310 - glycosyltransferase family 4 protein, at 1,594,119 to 1,595,288
_RS09310
Position (kb)
1592
1593
1594
1595 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1591.943 kb on + strand, within SGL_RS09295 at 1591.977 kb on - strand, within SGL_RS09295 at 1592.067 kb on + strand, within SGL_RS09295 at 1592.106 kb on + strand, within SGL_RS09295 at 1592.120 kb on + strand, within SGL_RS09295 at 1592.159 kb on - strand, within SGL_RS09295 at 1592.702 kb on - strand at 1592.853 kb on - strand at 1592.853 kb on - strand at 1592.911 kb on + strand at 1593.006 kb on + strand at 1593.088 kb on + strand, within SGL_RS09305 at 1593.106 kb on - strand, within SGL_RS09305 at 1593.185 kb on + strand, within SGL_RS09305 at 1593.193 kb on - strand, within SGL_RS09305 at 1593.193 kb on - strand, within SGL_RS09305 at 1593.209 kb on + strand, within SGL_RS09305 at 1593.209 kb on - strand, within SGL_RS09305 at 1593.265 kb on + strand, within SGL_RS09305 at 1593.295 kb on + strand, within SGL_RS09305 at 1593.384 kb on + strand, within SGL_RS09305 at 1593.392 kb on + strand, within SGL_RS09305 at 1593.576 kb on + strand, within SGL_RS09305 at 1593.584 kb on - strand, within SGL_RS09305 at 1593.584 kb on - strand, within SGL_RS09305 at 1593.594 kb on + strand, within SGL_RS09305 at 1593.755 kb on + strand, within SGL_RS09305 at 1593.929 kb on - strand at 1594.069 kb on + strand at 1594.076 kb on - strand at 1594.310 kb on + strand, within SGL_RS09310 at 1594.554 kb on - strand, within SGL_RS09310
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 1,591,943 + SGL_RS09295 0.77 -0.5 1,591,977 - SGL_RS09295 0.79 -0.7 1,592,067 + SGL_RS09295 0.84 -0.6 1,592,106 + SGL_RS09295 0.86 -0.4 1,592,120 + SGL_RS09295 0.87 -0.8 1,592,159 - SGL_RS09295 0.89 -0.6 1,592,702 - -0.3 1,592,853 - +0.0 1,592,853 - +0.3 1,592,911 + -0.2 1,593,006 + -0.6 1,593,088 + SGL_RS09305 0.16 -3.8 1,593,106 - SGL_RS09305 0.17 -2.6 1,593,185 + SGL_RS09305 0.25 -1.8 1,593,193 - SGL_RS09305 0.25 -2.4 1,593,193 - SGL_RS09305 0.25 -0.3 1,593,209 + SGL_RS09305 0.27 -2.6 1,593,209 - SGL_RS09305 0.27 -2.7 1,593,265 + SGL_RS09305 0.32 -2.0 1,593,295 + SGL_RS09305 0.35 -3.3 1,593,384 + SGL_RS09305 0.43 -1.0 1,593,392 + SGL_RS09305 0.44 -3.6 1,593,576 + SGL_RS09305 0.61 -1.3 1,593,584 - SGL_RS09305 0.61 -2.9 1,593,584 - SGL_RS09305 0.61 -1.6 1,593,594 + SGL_RS09305 0.62 -3.0 1,593,755 + SGL_RS09305 0.77 -3.3 1,593,929 - -1.2 1,594,069 + -0.9 1,594,076 - -2.3 1,594,310 + SGL_RS09310 0.16 -1.1 1,594,554 - SGL_RS09310 0.37 +0.0
Or see this region's nucleotide sequence