Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS08630 and SGL_RS08635 are separated by 60 nucleotides SGL_RS08635 and SGL_RS08640 are separated by 68 nucleotides
SGL_RS08630: SGL_RS08630 - PucC family protein, at 1,439,487 to 1,440,941
_RS08630
SGL_RS08635: SGL_RS08635 - response regulator, at 1,441,002 to 1,444,046
_RS08635
SGL_RS08640: SGL_RS08640 - NAD(P)/FAD-dependent oxidoreductase, at 1,444,115 to 1,445,392
_RS08640
Position (kb)
1441
1442
1443
1444
1445 Strain fitness (log2 ratio)
-1
0
1
2 at 1440.091 kb on - strand, within SGL_RS08630 at 1440.140 kb on + strand, within SGL_RS08630 at 1440.404 kb on + strand, within SGL_RS08630 at 1440.483 kb on - strand, within SGL_RS08630 at 1440.677 kb on - strand, within SGL_RS08630 at 1440.677 kb on - strand, within SGL_RS08630 at 1440.699 kb on - strand, within SGL_RS08630 at 1440.731 kb on + strand, within SGL_RS08630 at 1440.791 kb on - strand, within SGL_RS08630 at 1440.791 kb on - strand, within SGL_RS08630 at 1440.879 kb on + strand at 1441.029 kb on - strand at 1441.080 kb on + strand at 1441.133 kb on + strand at 1441.327 kb on + strand, within SGL_RS08635 at 1441.388 kb on + strand, within SGL_RS08635 at 1441.481 kb on + strand, within SGL_RS08635 at 1441.491 kb on - strand, within SGL_RS08635 at 1441.605 kb on - strand, within SGL_RS08635 at 1441.761 kb on - strand, within SGL_RS08635 at 1441.891 kb on - strand, within SGL_RS08635 at 1442.005 kb on - strand, within SGL_RS08635 at 1442.005 kb on - strand, within SGL_RS08635 at 1442.063 kb on - strand, within SGL_RS08635 at 1442.190 kb on - strand, within SGL_RS08635 at 1442.288 kb on - strand, within SGL_RS08635 at 1442.351 kb on - strand, within SGL_RS08635 at 1442.502 kb on + strand, within SGL_RS08635 at 1442.502 kb on + strand, within SGL_RS08635 at 1442.510 kb on - strand, within SGL_RS08635 at 1442.549 kb on + strand, within SGL_RS08635 at 1442.557 kb on + strand, within SGL_RS08635 at 1442.557 kb on - strand, within SGL_RS08635 at 1442.666 kb on + strand, within SGL_RS08635 at 1442.671 kb on + strand, within SGL_RS08635 at 1442.679 kb on - strand, within SGL_RS08635 at 1442.753 kb on + strand, within SGL_RS08635 at 1442.832 kb on + strand, within SGL_RS08635 at 1442.832 kb on + strand, within SGL_RS08635 at 1442.840 kb on - strand, within SGL_RS08635 at 1442.942 kb on + strand, within SGL_RS08635 at 1442.972 kb on - strand, within SGL_RS08635 at 1443.261 kb on - strand, within SGL_RS08635 at 1443.272 kb on - strand, within SGL_RS08635 at 1443.542 kb on - strand, within SGL_RS08635 at 1443.591 kb on + strand, within SGL_RS08635 at 1443.597 kb on + strand, within SGL_RS08635 at 1443.615 kb on - strand, within SGL_RS08635 at 1443.615 kb on - strand, within SGL_RS08635 at 1443.774 kb on + strand at 1443.820 kb on - strand at 1443.872 kb on + strand at 1443.875 kb on - strand at 1443.880 kb on - strand at 1443.896 kb on + strand at 1443.939 kb on - strand at 1444.038 kb on - strand at 1444.042 kb on - strand at 1444.296 kb on - strand, within SGL_RS08640 at 1444.491 kb on + strand, within SGL_RS08640 at 1444.497 kb on + strand, within SGL_RS08640 at 1444.505 kb on - strand, within SGL_RS08640 at 1444.505 kb on - strand, within SGL_RS08640 at 1444.505 kb on - strand, within SGL_RS08640 at 1444.606 kb on - strand, within SGL_RS08640 at 1444.615 kb on + strand, within SGL_RS08640 at 1444.806 kb on - strand, within SGL_RS08640 at 1444.901 kb on - strand, within SGL_RS08640 at 1444.943 kb on + strand, within SGL_RS08640 at 1444.946 kb on - strand, within SGL_RS08640 at 1444.951 kb on - strand, within SGL_RS08640 at 1444.951 kb on - strand, within SGL_RS08640
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 1,440,091 - SGL_RS08630 0.42 -0.2 1,440,140 + SGL_RS08630 0.45 +0.1 1,440,404 + SGL_RS08630 0.63 +0.2 1,440,483 - SGL_RS08630 0.68 +0.2 1,440,677 - SGL_RS08630 0.82 -0.5 1,440,677 - SGL_RS08630 0.82 +0.5 1,440,699 - SGL_RS08630 0.83 +1.1 1,440,731 + SGL_RS08630 0.85 +1.2 1,440,791 - SGL_RS08630 0.90 -0.2 1,440,791 - SGL_RS08630 0.90 -0.2 1,440,879 + -0.3 1,441,029 - +1.1 1,441,080 + +1.3 1,441,133 + +1.3 1,441,327 + SGL_RS08635 0.11 +1.5 1,441,388 + SGL_RS08635 0.13 +1.7 1,441,481 + SGL_RS08635 0.16 +0.9 1,441,491 - SGL_RS08635 0.16 +1.3 1,441,605 - SGL_RS08635 0.20 +1.6 1,441,761 - SGL_RS08635 0.25 +1.6 1,441,891 - SGL_RS08635 0.29 +0.3 1,442,005 - SGL_RS08635 0.33 +1.2 1,442,005 - SGL_RS08635 0.33 +1.5 1,442,063 - SGL_RS08635 0.35 +1.4 1,442,190 - SGL_RS08635 0.39 +2.1 1,442,288 - SGL_RS08635 0.42 +2.1 1,442,351 - SGL_RS08635 0.44 +1.4 1,442,502 + SGL_RS08635 0.49 +1.4 1,442,502 + SGL_RS08635 0.49 +1.4 1,442,510 - SGL_RS08635 0.50 +1.2 1,442,549 + SGL_RS08635 0.51 +1.5 1,442,557 + SGL_RS08635 0.51 +1.0 1,442,557 - SGL_RS08635 0.51 +1.4 1,442,666 + SGL_RS08635 0.55 +1.3 1,442,671 + SGL_RS08635 0.55 +1.6 1,442,679 - SGL_RS08635 0.55 +1.7 1,442,753 + SGL_RS08635 0.58 +1.8 1,442,832 + SGL_RS08635 0.60 +2.3 1,442,832 + SGL_RS08635 0.60 +1.7 1,442,840 - SGL_RS08635 0.60 +1.2 1,442,942 + SGL_RS08635 0.64 +1.7 1,442,972 - SGL_RS08635 0.65 +1.7 1,443,261 - SGL_RS08635 0.74 +1.8 1,443,272 - SGL_RS08635 0.75 +1.3 1,443,542 - SGL_RS08635 0.83 +1.5 1,443,591 + SGL_RS08635 0.85 +1.2 1,443,597 + SGL_RS08635 0.85 +1.6 1,443,615 - SGL_RS08635 0.86 +1.3 1,443,615 - SGL_RS08635 0.86 +1.3 1,443,774 + +2.3 1,443,820 - +1.5 1,443,872 + +1.4 1,443,875 - +1.0 1,443,880 - +1.3 1,443,896 + +2.1 1,443,939 - +1.2 1,444,038 - +1.2 1,444,042 - +1.2 1,444,296 - SGL_RS08640 0.14 -1.1 1,444,491 + SGL_RS08640 0.29 -0.8 1,444,497 + SGL_RS08640 0.30 -0.7 1,444,505 - SGL_RS08640 0.31 -1.7 1,444,505 - SGL_RS08640 0.31 -0.8 1,444,505 - SGL_RS08640 0.31 -1.0 1,444,606 - SGL_RS08640 0.38 -0.5 1,444,615 + SGL_RS08640 0.39 -0.5 1,444,806 - SGL_RS08640 0.54 -0.9 1,444,901 - SGL_RS08640 0.62 -0.4 1,444,943 + SGL_RS08640 0.65 -0.8 1,444,946 - SGL_RS08640 0.65 -0.3 1,444,951 - SGL_RS08640 0.65 -0.7 1,444,951 - SGL_RS08640 0.65 -0.7
Or see this region's nucleotide sequence