Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS08595

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS08585 and SGL_RS08590 are separated by 212 nucleotidesSGL_RS08590 and SGL_RS08595 are separated by 94 nucleotidesSGL_RS08595 and SGL_RS08600 are separated by 77 nucleotides SGL_RS08585: SGL_RS08585 - allophycocyanin subunit beta, at 1,431,000 to 1,431,485 _RS08585 SGL_RS08590: SGL_RS08590 - phycobilisome linker polypeptide, at 1,431,698 to 1,431,901 _RS08590 SGL_RS08595: SGL_RS08595 - 50S ribosomal protein L11 methyltransferase, at 1,431,996 to 1,432,898 _RS08595 SGL_RS08600: SGL_RS08600 - phosphoglycerate dehydrogenase, at 1,432,976 to 1,434,640 _RS08600 Position (kb) 1431 1432 1433Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1431.812 kb on + strand, within SGL_RS08590at 1431.904 kb on - strandat 1432.148 kb on + strand, within SGL_RS08595at 1432.236 kb on - strand, within SGL_RS08595at 1432.361 kb on - strand, within SGL_RS08595at 1432.710 kb on - strand, within SGL_RS08595

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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1,431,812 + SGL_RS08590 0.56 +0.9
1,431,904 - -0.8
1,432,148 + SGL_RS08595 0.17 -4.0
1,432,236 - SGL_RS08595 0.27 -2.8
1,432,361 - SGL_RS08595 0.40 -2.7
1,432,710 - SGL_RS08595 0.79 -1.4

Or see this region's nucleotide sequence