Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07925

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07915 and SGL_RS07920 are separated by 122 nucleotidesSGL_RS07920 and SGL_RS07925 are separated by 140 nucleotidesSGL_RS07925 and SGL_RS07930 are separated by 41 nucleotides SGL_RS07915: SGL_RS07915 - DUF29 domain-containing protein, at 1,291,631 to 1,292,092 _RS07915 SGL_RS07920: SGL_RS07920 - DUF29 domain-containing protein, at 1,292,215 to 1,292,679 _RS07920 SGL_RS07925: SGL_RS07925 - methyltransferase domain-containing protein, at 1,292,820 to 1,293,356 _RS07925 SGL_RS07930: SGL_RS07930 - hypothetical protein, at 1,293,398 to 1,295,551 _RS07930 Position (kb) 1292 1293 1294Strain fitness (log2 ratio) -1 0 1at 1291.881 kb on - strand, within SGL_RS07915at 1292.353 kb on + strand, within SGL_RS07920at 1292.892 kb on + strand, within SGL_RS07925at 1293.061 kb on - strand, within SGL_RS07925at 1293.061 kb on - strand, within SGL_RS07925at 1293.268 kb on + strand, within SGL_RS07925at 1293.821 kb on + strand, within SGL_RS07930

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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1,291,881 - SGL_RS07915 0.54 +0.1
1,292,353 + SGL_RS07920 0.30 +0.1
1,292,892 + SGL_RS07925 0.13 +1.0
1,293,061 - SGL_RS07925 0.45 +0.6
1,293,061 - SGL_RS07925 0.45 +0.7
1,293,268 + SGL_RS07925 0.83 +1.0
1,293,821 + SGL_RS07930 0.20 +1.4

Or see this region's nucleotide sequence