Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS07310

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS07305 and SGL_RS07310 are separated by 157 nucleotidesSGL_RS07310 and SGL_RS07315 are separated by 69 nucleotides SGL_RS07305: SGL_RS07305 - N-acetylmuramic acid 6-phosphate etherase, at 1,163,421 to 1,164,338 _RS07305 SGL_RS07310: SGL_RS07310 - DUF3110 domain-containing protein, at 1,164,496 to 1,165,017 _RS07310 SGL_RS07315: SGL_RS07315 - apocytochrome f, at 1,165,087 to 1,166,073 _RS07315 Position (kb) 1164 1165 1166Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 1163.574 kb on + strand, within SGL_RS07305at 1163.861 kb on - strand, within SGL_RS07305at 1163.873 kb on - strand, within SGL_RS07305at 1163.888 kb on - strand, within SGL_RS07305at 1163.960 kb on - strand, within SGL_RS07305at 1163.987 kb on + strand, within SGL_RS07305at 1164.000 kb on + strand, within SGL_RS07305at 1164.112 kb on + strand, within SGL_RS07305at 1164.705 kb on - strand, within SGL_RS07310at 1164.769 kb on + strand, within SGL_RS07310at 1164.787 kb on - strand, within SGL_RS07310at 1164.815 kb on + strand, within SGL_RS07310at 1164.847 kb on + strand, within SGL_RS07310at 1164.948 kb on - strand, within SGL_RS07310at 1164.958 kb on + strand, within SGL_RS07310at 1164.963 kb on + strand, within SGL_RS07310at 1165.034 kb on + strandat 1165.040 kb on + strandat 1165.042 kb on - strandat 1165.048 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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1,163,574 + SGL_RS07305 0.17 -3.3
1,163,861 - SGL_RS07305 0.48 -5.0
1,163,873 - SGL_RS07305 0.49 -3.2
1,163,888 - SGL_RS07305 0.51 -2.3
1,163,960 - SGL_RS07305 0.59 -3.4
1,163,987 + SGL_RS07305 0.62 -2.8
1,164,000 + SGL_RS07305 0.63 -4.8
1,164,112 + SGL_RS07305 0.75 -3.7
1,164,705 - SGL_RS07310 0.40 -1.4
1,164,769 + SGL_RS07310 0.52 -2.7
1,164,787 - SGL_RS07310 0.56 -1.9
1,164,815 + SGL_RS07310 0.61 -3.1
1,164,847 + SGL_RS07310 0.67 -2.7
1,164,948 - SGL_RS07310 0.87 -0.7
1,164,958 + SGL_RS07310 0.89 -0.7
1,164,963 + SGL_RS07310 0.89 -0.6
1,165,034 + +0.8
1,165,040 + -0.7
1,165,042 - +0.1
1,165,048 - -0.7

Or see this region's nucleotide sequence