Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS07195 and SGL_RS19440 are separated by 26 nucleotides SGL_RS19440 and SGL_RS07200 are separated by 320 nucleotides SGL_RS07200 and SGL_RS07205 are separated by 116 nucleotides SGL_RS07205 and SGL_RS07210 are separated by 148 nucleotides SGL_RS07210 and SGL_RS07215 are separated by 32 nucleotides
SGL_RS07195: SGL_RS07195 - LptF/LptG family permease, at 1,143,053 to 1,144,231
_RS07195
SGL_RS19440: SGL_RS19440 - hypothetical protein, at 1,144,258 to 1,144,407
_RS19440
SGL_RS07200: SGL_RS07200 - LCP family protein, at 1,144,728 to 1,146,173
_RS07200
SGL_RS07205: SGL_RS07205 - hypothetical protein, at 1,146,290 to 1,146,718
_RS07205
SGL_RS07210: SGL_RS07210 - hypothetical protein, at 1,146,867 to 1,147,046
_RS07210
SGL_RS07215: SGL_RS07215 - type I glyceraldehyde-3-phosphate dehydrogenase, at 1,147,079 to 1,148,098
_RS07215
Position (kb)
1144
1145
1146
1147 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1144.279 kb on + strand, within SGL_RS19440 at 1144.327 kb on - strand, within SGL_RS19440 at 1144.506 kb on + strand at 1145.024 kb on - strand, within SGL_RS07200 at 1145.069 kb on - strand, within SGL_RS07200 at 1145.070 kb on - strand, within SGL_RS07200 at 1145.071 kb on + strand, within SGL_RS07200 at 1145.079 kb on - strand, within SGL_RS07200 at 1145.301 kb on + strand, within SGL_RS07200 at 1145.305 kb on - strand, within SGL_RS07200 at 1145.757 kb on - strand, within SGL_RS07200 at 1145.815 kb on - strand, within SGL_RS07200 at 1146.123 kb on - strand at 1146.154 kb on + strand at 1146.167 kb on + strand at 1146.368 kb on - strand, within SGL_RS07205 at 1146.485 kb on - strand, within SGL_RS07205 at 1146.540 kb on + strand, within SGL_RS07205 at 1146.601 kb on - strand, within SGL_RS07205 at 1146.601 kb on - strand, within SGL_RS07205 at 1146.683 kb on - strand at 1146.752 kb on - strand at 1146.776 kb on - strand at 1146.840 kb on - strand at 1146.900 kb on - strand, within SGL_RS07210 at 1146.977 kb on + strand, within SGL_RS07210 at 1147.001 kb on + strand, within SGL_RS07210 at 1147.003 kb on + strand, within SGL_RS07210 at 1147.158 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 1,144,279 + SGL_RS19440 0.14 -0.2 1,144,327 - SGL_RS19440 0.46 -0.2 1,144,506 + +0.5 1,145,024 - SGL_RS07200 0.20 -1.3 1,145,069 - SGL_RS07200 0.24 -2.3 1,145,070 - SGL_RS07200 0.24 -2.7 1,145,071 + SGL_RS07200 0.24 -2.4 1,145,079 - SGL_RS07200 0.24 -2.5 1,145,301 + SGL_RS07200 0.40 -1.7 1,145,305 - SGL_RS07200 0.40 -1.5 1,145,757 - SGL_RS07200 0.71 -4.3 1,145,815 - SGL_RS07200 0.75 -1.3 1,146,123 - +0.1 1,146,154 + -0.1 1,146,167 + -0.2 1,146,368 - SGL_RS07205 0.18 +0.6 1,146,485 - SGL_RS07205 0.45 -0.2 1,146,540 + SGL_RS07205 0.58 +0.2 1,146,601 - SGL_RS07205 0.72 -0.1 1,146,601 - SGL_RS07205 0.72 +1.1 1,146,683 - +0.2 1,146,752 - +0.5 1,146,776 - +0.9 1,146,840 - +0.4 1,146,900 - SGL_RS07210 0.18 +0.8 1,146,977 + SGL_RS07210 0.61 -0.8 1,147,001 + SGL_RS07210 0.74 +0.3 1,147,003 + SGL_RS07210 0.76 +0.4 1,147,158 + -0.2
Or see this region's nucleotide sequence