Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06595 and SGL_RS06600 are separated by 135 nucleotides SGL_RS06600 and SGL_RS06605 are separated by 215 nucleotides SGL_RS06605 and SGL_RS06610 overlap by 4 nucleotides
SGL_RS06595: SGL_RS06595 - CmpA/NrtA family ABC transporter substrate-binding protein, at 1,009,234 to 1,010,574
_RS06595
SGL_RS06600: SGL_RS06600 - anthranilate phosphoribosyltransferase family protein, at 1,010,710 to 1,011,759
_RS06600
SGL_RS06605: SGL_RS06605 - histidine phosphatase family protein, at 1,011,975 to 1,012,619
_RS06605
SGL_RS06610: SGL_RS06610 - RlpA-like double-psi beta-barrel domain-containing protein, at 1,012,616 to 1,012,888
_RS06610
Position (kb)
1010
1011
1012 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1009.724 kb on + strand, within SGL_RS06595 at 1009.852 kb on - strand, within SGL_RS06595 at 1010.014 kb on - strand, within SGL_RS06595 at 1010.060 kb on - strand, within SGL_RS06595 at 1010.201 kb on - strand, within SGL_RS06595 at 1010.205 kb on + strand, within SGL_RS06595 at 1010.241 kb on - strand, within SGL_RS06595 at 1010.449 kb on + strand at 1010.583 kb on - strand at 1010.853 kb on - strand, within SGL_RS06600 at 1010.895 kb on - strand, within SGL_RS06600 at 1010.924 kb on - strand, within SGL_RS06600 at 1011.007 kb on + strand, within SGL_RS06600 at 1011.031 kb on + strand, within SGL_RS06600 at 1011.098 kb on - strand, within SGL_RS06600 at 1011.186 kb on + strand, within SGL_RS06600 at 1011.214 kb on + strand, within SGL_RS06600 at 1011.241 kb on + strand, within SGL_RS06600 at 1011.477 kb on - strand, within SGL_RS06600 at 1011.477 kb on - strand, within SGL_RS06600 at 1011.514 kb on - strand, within SGL_RS06600 at 1011.631 kb on - strand, within SGL_RS06600 at 1012.034 kb on + strand at 1012.160 kb on + strand, within SGL_RS06605 at 1012.213 kb on + strand, within SGL_RS06605 at 1012.218 kb on + strand, within SGL_RS06605 at 1012.221 kb on - strand, within SGL_RS06605 at 1012.337 kb on - strand, within SGL_RS06605 at 1012.346 kb on - strand, within SGL_RS06605 at 1012.445 kb on - strand, within SGL_RS06605 at 1012.479 kb on - strand, within SGL_RS06605 at 1012.657 kb on + strand, within SGL_RS06610 at 1012.759 kb on + strand, within SGL_RS06610
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 1,009,724 + SGL_RS06595 0.37 -3.5 1,009,852 - SGL_RS06595 0.46 -3.7 1,010,014 - SGL_RS06595 0.58 -3.5 1,010,060 - SGL_RS06595 0.62 -4.3 1,010,201 - SGL_RS06595 0.72 -2.8 1,010,205 + SGL_RS06595 0.72 -2.5 1,010,241 - SGL_RS06595 0.75 -2.9 1,010,449 + -2.7 1,010,583 - -3.8 1,010,853 - SGL_RS06600 0.14 -3.3 1,010,895 - SGL_RS06600 0.18 -1.6 1,010,924 - SGL_RS06600 0.20 -2.0 1,011,007 + SGL_RS06600 0.28 -2.5 1,011,031 + SGL_RS06600 0.31 -3.1 1,011,098 - SGL_RS06600 0.37 -2.5 1,011,186 + SGL_RS06600 0.45 -1.5 1,011,214 + SGL_RS06600 0.48 -2.4 1,011,241 + SGL_RS06600 0.51 -2.0 1,011,477 - SGL_RS06600 0.73 -1.9 1,011,477 - SGL_RS06600 0.73 -3.7 1,011,514 - SGL_RS06600 0.77 -2.3 1,011,631 - SGL_RS06600 0.88 -3.3 1,012,034 + +0.3 1,012,160 + SGL_RS06605 0.29 +0.3 1,012,213 + SGL_RS06605 0.37 +0.6 1,012,218 + SGL_RS06605 0.38 -0.0 1,012,221 - SGL_RS06605 0.38 +0.5 1,012,337 - SGL_RS06605 0.56 +0.5 1,012,346 - SGL_RS06605 0.58 +0.3 1,012,445 - SGL_RS06605 0.73 -0.1 1,012,479 - SGL_RS06605 0.78 +0.2 1,012,657 + SGL_RS06610 0.15 +0.4 1,012,759 + SGL_RS06610 0.52 -0.1
Or see this region's nucleotide sequence