Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS06580 and SGL_RS06585 are separated by 54 nucleotides SGL_RS06585 and SGL_RS06590 are separated by 74 nucleotides SGL_RS06590 and SGL_RS06595 are separated by 85 nucleotides
SGL_RS06580: SGL_RS06580 - nitrate ABC transporter ATP-binding protein, at 1,005,355 to 1,006,179
_RS06580
SGL_RS06585: SGL_RS06585 - nitrate ABC transporter ATP-binding protein, at 1,006,234 to 1,008,246
_RS06585
SGL_RS06590: SGL_RS06590 - nitrate ABC transporter permease, at 1,008,321 to 1,009,148
_RS06590
SGL_RS06595: SGL_RS06595 - CmpA/NrtA family ABC transporter substrate-binding protein, at 1,009,234 to 1,010,574
_RS06595
Position (kb)
1006
1007
1008
1009 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1005.346 kb on - strand at 1005.346 kb on - strand at 1005.462 kb on - strand, within SGL_RS06580 at 1005.716 kb on - strand, within SGL_RS06580 at 1006.720 kb on + strand, within SGL_RS06585 at 1006.787 kb on + strand, within SGL_RS06585 at 1007.138 kb on - strand, within SGL_RS06585 at 1007.153 kb on + strand, within SGL_RS06585 at 1007.214 kb on - strand, within SGL_RS06585 at 1007.660 kb on - strand, within SGL_RS06585 at 1007.864 kb on + strand, within SGL_RS06585 at 1007.869 kb on + strand, within SGL_RS06585 at 1008.187 kb on - strand at 1008.438 kb on + strand, within SGL_RS06590 at 1008.438 kb on + strand, within SGL_RS06590 at 1008.647 kb on - strand, within SGL_RS06590 at 1008.724 kb on - strand, within SGL_RS06590 at 1008.756 kb on + strand, within SGL_RS06590 at 1008.842 kb on + strand, within SGL_RS06590 at 1008.866 kb on + strand, within SGL_RS06590 at 1008.886 kb on - strand, within SGL_RS06590 at 1008.991 kb on + strand, within SGL_RS06590 at 1008.999 kb on - strand, within SGL_RS06590 at 1009.002 kb on + strand, within SGL_RS06590 at 1009.200 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 1,005,346 - -3.6 1,005,346 - -3.9 1,005,462 - SGL_RS06580 0.13 -0.3 1,005,716 - SGL_RS06580 0.44 -3.5 1,006,720 + SGL_RS06585 0.24 -3.3 1,006,787 + SGL_RS06585 0.27 -3.0 1,007,138 - SGL_RS06585 0.45 -4.3 1,007,153 + SGL_RS06585 0.46 -3.1 1,007,214 - SGL_RS06585 0.49 -2.5 1,007,660 - SGL_RS06585 0.71 -3.5 1,007,864 + SGL_RS06585 0.81 -0.3 1,007,869 + SGL_RS06585 0.81 -2.5 1,008,187 - -1.7 1,008,438 + SGL_RS06590 0.14 -2.9 1,008,438 + SGL_RS06590 0.14 -3.4 1,008,647 - SGL_RS06590 0.39 -2.5 1,008,724 - SGL_RS06590 0.49 -3.4 1,008,756 + SGL_RS06590 0.53 -2.9 1,008,842 + SGL_RS06590 0.63 -3.5 1,008,866 + SGL_RS06590 0.66 -2.7 1,008,886 - SGL_RS06590 0.68 -2.3 1,008,991 + SGL_RS06590 0.81 -2.5 1,008,999 - SGL_RS06590 0.82 -3.7 1,009,002 + SGL_RS06590 0.82 -4.7 1,009,200 - -1.7
Or see this region's nucleotide sequence