Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS06430

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS06425 and SGL_RS06430 are separated by 289 nucleotidesSGL_RS06430 and SGL_RS06435 are separated by 57 nucleotides SGL_RS06425: SGL_RS06425 - ATP-dependent DNA helicase RecQ, at 974,053 to 975,489 _RS06425 SGL_RS06430: SGL_RS06430 - glycosyltransferase family 2 protein, at 975,779 to 976,648 _RS06430 SGL_RS06435: SGL_RS06435 - cobalt-precorrin-5B (C(1))-methyltransferase CbiD, at 976,706 to 977,842 _RS06435 Position (kb) 975 976 977Strain fitness (log2 ratio) -3 -2 -1 0 1at 974.825 kb on + strand, within SGL_RS06425at 974.852 kb on + strand, within SGL_RS06425at 975.047 kb on - strand, within SGL_RS06425at 975.047 kb on - strand, within SGL_RS06425at 975.203 kb on + strand, within SGL_RS06425at 975.211 kb on - strand, within SGL_RS06425at 975.289 kb on - strand, within SGL_RS06425at 975.316 kb on - strand, within SGL_RS06425at 975.376 kb on - strandat 975.461 kb on + strandat 975.572 kb on - strandat 975.840 kb on + strandat 975.982 kb on + strand, within SGL_RS06430at 976.009 kb on + strand, within SGL_RS06430at 976.400 kb on + strand, within SGL_RS06430at 976.801 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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974,825 + SGL_RS06425 0.54 +0.0
974,852 + SGL_RS06425 0.56 +0.3
975,047 - SGL_RS06425 0.69 +0.7
975,047 - SGL_RS06425 0.69 +0.3
975,203 + SGL_RS06425 0.80 +0.1
975,211 - SGL_RS06425 0.81 +0.5
975,289 - SGL_RS06425 0.86 -0.1
975,316 - SGL_RS06425 0.88 +0.1
975,376 - +0.4
975,461 + +0.1
975,572 - -1.3
975,840 + -3.6
975,982 + SGL_RS06430 0.23 -1.6
976,009 + SGL_RS06430 0.26 -2.2
976,400 + SGL_RS06430 0.71 -0.9
976,801 + -2.2

Or see this region's nucleotide sequence