Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05935 and SGL_RS05940 are separated by 135 nucleotides SGL_RS05940 and SGL_RS05945 are separated by 95 nucleotides SGL_RS05945 and SGL_RS05950 overlap by 4 nucleotides SGL_RS05950 and SGL_RS05955 are separated by 163 nucleotides
SGL_RS05935: SGL_RS05935 - TatD family hydrolase, at 860,952 to 861,737
_RS05935
SGL_RS05940: SGL_RS05940 - 30S ribosomal protein S20, at 861,873 to 862,166
_RS05940
SGL_RS05945: SGL_RS05945 - PAS domain S-box protein, at 862,262 to 866,377
_RS05945
SGL_RS05950: SGL_RS05950 - hypothetical protein, at 866,374 to 867,093
_RS05950
SGL_RS05955: SGL_RS05955 - ATP-dependent helicase, at 867,257 to 869,569
_RS05955
Position (kb) 862
863
864
865
866
867 Strain fitness (log2 ratio) -1
0
1
2 at 861.860 kb on - strand at 861.900 kb on + strand at 862.266 kb on + strand at 862.328 kb on + strand at 862.519 kb on + strand at 862.660 kb on - strand at 862.664 kb on + strand at 862.664 kb on + strand at 862.836 kb on - strand, within SGL_RS05945 at 863.142 kb on - strand, within SGL_RS05945 at 863.153 kb on - strand, within SGL_RS05945 at 863.223 kb on - strand, within SGL_RS05945 at 863.223 kb on - strand, within SGL_RS05945 at 863.230 kb on - strand, within SGL_RS05945 at 863.401 kb on + strand, within SGL_RS05945 at 863.423 kb on - strand, within SGL_RS05945 at 863.423 kb on - strand, within SGL_RS05945 at 863.425 kb on + strand, within SGL_RS05945 at 863.519 kb on - strand, within SGL_RS05945 at 863.872 kb on + strand, within SGL_RS05945 at 864.022 kb on - strand, within SGL_RS05945 at 864.069 kb on + strand, within SGL_RS05945 at 864.207 kb on + strand, within SGL_RS05945 at 864.405 kb on - strand, within SGL_RS05945 at 864.452 kb on + strand, within SGL_RS05945 at 864.747 kb on + strand, within SGL_RS05945 at 864.812 kb on - strand, within SGL_RS05945 at 864.828 kb on + strand, within SGL_RS05945 at 864.852 kb on + strand, within SGL_RS05945 at 864.886 kb on - strand, within SGL_RS05945 at 864.993 kb on + strand, within SGL_RS05945 at 865.476 kb on - strand, within SGL_RS05945 at 865.543 kb on + strand, within SGL_RS05945 at 865.762 kb on - strand, within SGL_RS05945 at 865.805 kb on - strand, within SGL_RS05945 at 865.884 kb on - strand, within SGL_RS05945 at 865.964 kb on - strand, within SGL_RS05945 at 866.088 kb on + strand at 866.096 kb on - strand at 866.099 kb on + strand at 866.234 kb on - strand at 866.234 kb on - strand at 866.234 kb on - strand at 866.284 kb on + strand at 866.294 kb on - strand at 866.399 kb on - strand at 866.411 kb on - strand at 866.536 kb on - strand, within SGL_RS05950 at 866.622 kb on + strand, within SGL_RS05950 at 866.635 kb on + strand, within SGL_RS05950 at 866.635 kb on + strand, within SGL_RS05950 at 866.643 kb on - strand, within SGL_RS05950 at 866.715 kb on - strand, within SGL_RS05950 at 867.005 kb on - strand, within SGL_RS05950 at 867.281 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 861,860 - -0.6 861,900 + -0.6 862,266 + +0.5 862,328 + -1.6 862,519 + +0.4 862,660 - +0.9 862,664 + +1.8 862,664 + +0.0 862,836 - SGL_RS05945 0.14 +0.9 863,142 - SGL_RS05945 0.21 +0.6 863,153 - SGL_RS05945 0.22 +1.0 863,223 - SGL_RS05945 0.23 +0.4 863,223 - SGL_RS05945 0.23 +0.6 863,230 - SGL_RS05945 0.24 +0.1 863,401 + SGL_RS05945 0.28 +0.5 863,423 - SGL_RS05945 0.28 +0.7 863,423 - SGL_RS05945 0.28 +0.8 863,425 + SGL_RS05945 0.28 +0.8 863,519 - SGL_RS05945 0.31 +0.7 863,872 + SGL_RS05945 0.39 +0.8 864,022 - SGL_RS05945 0.43 +0.5 864,069 + SGL_RS05945 0.44 +0.8 864,207 + SGL_RS05945 0.47 +0.4 864,405 - SGL_RS05945 0.52 +0.7 864,452 + SGL_RS05945 0.53 +1.0 864,747 + SGL_RS05945 0.60 +0.4 864,812 - SGL_RS05945 0.62 +0.9 864,828 + SGL_RS05945 0.62 +0.6 864,852 + SGL_RS05945 0.63 +0.6 864,886 - SGL_RS05945 0.64 +0.9 864,993 + SGL_RS05945 0.66 +0.9 865,476 - SGL_RS05945 0.78 +0.7 865,543 + SGL_RS05945 0.80 +0.8 865,762 - SGL_RS05945 0.85 +0.6 865,805 - SGL_RS05945 0.86 +0.7 865,884 - SGL_RS05945 0.88 +0.9 865,964 - SGL_RS05945 0.90 +1.0 866,088 + +0.7 866,096 - +0.5 866,099 + +0.7 866,234 - +1.0 866,234 - +0.7 866,234 - +0.6 866,284 + +0.7 866,294 - +0.8 866,399 - +1.3 866,411 - +0.4 866,536 - SGL_RS05950 0.23 +0.0 866,622 + SGL_RS05950 0.34 +1.3 866,635 + SGL_RS05950 0.36 +0.6 866,635 + SGL_RS05950 0.36 +0.5 866,643 - SGL_RS05950 0.37 +0.8 866,715 - SGL_RS05950 0.47 +0.6 867,005 - SGL_RS05950 0.88 +0.7 867,281 + +0.3
Or see this region's nucleotide sequence