Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS05855

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS05850 and SGL_RS05855 are separated by 491 nucleotidesSGL_RS05855 and SGL_RS05860 are separated by 37 nucleotidesSGL_RS05860 and SGL_RS05865 are separated by 6 nucleotides SGL_RS05850: SGL_RS05850 - 50S ribosomal protein L3, at 841,972 to 842,613 _RS05850 SGL_RS05855: SGL_RS05855 - Dps family protein, at 843,105 to 843,575 _RS05855 SGL_RS05860: SGL_RS05860 - chorismate lyase, at 843,613 to 844,221 _RS05860 SGL_RS05865: SGL_RS05865 - metallophosphoesterase, at 844,228 to 845,394 _RS05865 Position (kb) 843 844Strain fitness (log2 ratio) -2 -1 0 1at 843.148 kb on + strandat 843.184 kb on + strand, within SGL_RS05855at 843.601 kb on - strandat 844.399 kb on - strand, within SGL_RS05865at 844.408 kb on + strand, within SGL_RS05865at 844.416 kb on - strand, within SGL_RS05865at 844.418 kb on + strand, within SGL_RS05865at 844.476 kb on + strand, within SGL_RS05865at 844.532 kb on - strand, within SGL_RS05865

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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843,148 + +0.3
843,184 + SGL_RS05855 0.17 +0.1
843,601 - +0.1
844,399 - SGL_RS05865 0.15 -2.2
844,408 + SGL_RS05865 0.15 -0.4
844,416 - SGL_RS05865 0.16 -0.5
844,418 + SGL_RS05865 0.16 -0.1
844,476 + SGL_RS05865 0.21 -0.3
844,532 - SGL_RS05865 0.26 -0.3

Or see this region's nucleotide sequence