Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05475 and SGL_RS05480 overlap by 79 nucleotides SGL_RS05480 and SGL_RS05485 are separated by 60 nucleotides SGL_RS05485 and SGL_RS05490 overlap by 4 nucleotides SGL_RS05490 and SGL_RS05495 are separated by 208 nucleotides
SGL_RS05475: SGL_RS05475 - glycosyltransferase family 39 protein, at 772,517 to 773,905
_RS05475
SGL_RS05480: SGL_RS05480 - FAD-dependent oxidoreductase, at 773,827 to 775,626
_RS05480
SGL_RS05485: SGL_RS05485 - putative toxin-antitoxin system toxin component, PIN family, at 775,687 to 776,061
_RS05485
SGL_RS05490: SGL_RS05490 - hypothetical protein, at 776,058 to 776,342
_RS05490
SGL_RS05495: SGL_RS05495 - hypothetical protein, at 776,551 to 776,937
_RS05495
Position (kb) 773
774
775
776 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 772.852 kb on + strand, within SGL_RS05475 at 772.934 kb on + strand, within SGL_RS05475 at 772.934 kb on - strand, within SGL_RS05475 at 772.971 kb on + strand, within SGL_RS05475 at 773.206 kb on - strand, within SGL_RS05475 at 773.315 kb on + strand, within SGL_RS05475 at 773.368 kb on - strand, within SGL_RS05475 at 773.416 kb on + strand, within SGL_RS05475 at 773.429 kb on + strand, within SGL_RS05475 at 773.429 kb on + strand, within SGL_RS05475 at 773.439 kb on + strand, within SGL_RS05475 at 773.439 kb on - strand, within SGL_RS05475 at 773.471 kb on - strand, within SGL_RS05475 at 773.498 kb on + strand, within SGL_RS05475 at 773.600 kb on + strand, within SGL_RS05475 at 773.637 kb on + strand, within SGL_RS05475 at 773.728 kb on - strand, within SGL_RS05475 at 774.122 kb on - strand, within SGL_RS05480 at 774.308 kb on + strand, within SGL_RS05480 at 774.329 kb on + strand, within SGL_RS05480 at 774.410 kb on - strand, within SGL_RS05480 at 774.412 kb on - strand, within SGL_RS05480 at 775.044 kb on + strand, within SGL_RS05480 at 775.054 kb on - strand, within SGL_RS05480 at 775.476 kb on + strand at 775.489 kb on + strand at 775.530 kb on + strand at 775.882 kb on - strand, within SGL_RS05485 at 776.016 kb on - strand, within SGL_RS05485 at 776.152 kb on + strand, within SGL_RS05490 at 776.285 kb on + strand, within SGL_RS05490
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 772,852 + SGL_RS05475 0.24 +0.3 772,934 + SGL_RS05475 0.30 +0.5 772,934 - SGL_RS05475 0.30 -0.2 772,971 + SGL_RS05475 0.33 +0.3 773,206 - SGL_RS05475 0.50 +0.2 773,315 + SGL_RS05475 0.57 -0.0 773,368 - SGL_RS05475 0.61 +0.2 773,416 + SGL_RS05475 0.65 -0.0 773,429 + SGL_RS05475 0.66 +0.1 773,429 + SGL_RS05475 0.66 +0.6 773,439 + SGL_RS05475 0.66 +0.2 773,439 - SGL_RS05475 0.66 -0.1 773,471 - SGL_RS05475 0.69 +0.1 773,498 + SGL_RS05475 0.71 -0.1 773,600 + SGL_RS05475 0.78 -0.4 773,637 + SGL_RS05475 0.81 +0.3 773,728 - SGL_RS05475 0.87 +0.2 774,122 - SGL_RS05480 0.16 -0.7 774,308 + SGL_RS05480 0.27 -2.4 774,329 + SGL_RS05480 0.28 -2.3 774,410 - SGL_RS05480 0.32 -1.8 774,412 - SGL_RS05480 0.33 -0.9 775,044 + SGL_RS05480 0.68 -2.4 775,054 - SGL_RS05480 0.68 -3.9 775,476 + -3.8 775,489 + -2.0 775,530 + -2.4 775,882 - SGL_RS05485 0.52 +0.2 776,016 - SGL_RS05485 0.88 -0.2 776,152 + SGL_RS05490 0.33 -0.4 776,285 + SGL_RS05490 0.80 +0.2
Or see this region's nucleotide sequence