Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS05415 and SGL_RS05420 are separated by 156 nucleotides SGL_RS05420 and SGL_RS05425 are separated by 253 nucleotides
SGL_RS05415: SGL_RS05415 - prepilin-type N-terminal cleavage/methylation domain-containing protein, at 757,671 to 758,753
_RS05415
SGL_RS05420: SGL_RS05420 - hypothetical protein, at 758,910 to 761,228
_RS05420
SGL_RS05425: SGL_RS05425 - ABC transporter ATP-binding protein, at 761,482 to 763,263
_RS05425
Position (kb) 758
759
760
761
762 Strain fitness (log2 ratio) -1
0
1
2 at 758.029 kb on + strand, within SGL_RS05415 at 758.328 kb on - strand, within SGL_RS05415 at 758.362 kb on + strand, within SGL_RS05415 at 758.517 kb on + strand, within SGL_RS05415 at 759.129 kb on - strand at 759.129 kb on - strand at 759.177 kb on + strand, within SGL_RS05420 at 759.248 kb on - strand, within SGL_RS05420 at 759.262 kb on + strand, within SGL_RS05420 at 759.274 kb on - strand, within SGL_RS05420 at 759.345 kb on + strand, within SGL_RS05420 at 759.352 kb on + strand, within SGL_RS05420 at 759.534 kb on - strand, within SGL_RS05420 at 759.827 kb on + strand, within SGL_RS05420 at 759.953 kb on + strand, within SGL_RS05420 at 759.981 kb on - strand, within SGL_RS05420 at 760.049 kb on - strand, within SGL_RS05420 at 760.322 kb on + strand, within SGL_RS05420 at 760.486 kb on - strand, within SGL_RS05420 at 760.628 kb on - strand, within SGL_RS05420 at 760.651 kb on - strand, within SGL_RS05420 at 760.651 kb on - strand, within SGL_RS05420 at 760.737 kb on + strand, within SGL_RS05420 at 760.994 kb on - strand, within SGL_RS05420 at 761.022 kb on + strand at 761.023 kb on + strand at 761.023 kb on + strand at 761.108 kb on - strand at 761.334 kb on - strand at 761.397 kb on + strand at 761.429 kb on + strand at 761.437 kb on - strand at 761.439 kb on - strand at 761.554 kb on + strand at 761.841 kb on - strand, within SGL_RS05425 at 761.957 kb on - strand, within SGL_RS05425 at 761.989 kb on + strand, within SGL_RS05425 at 762.068 kb on + strand, within SGL_RS05425 at 762.079 kb on + strand, within SGL_RS05425
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 758,029 + SGL_RS05415 0.33 +1.5 758,328 - SGL_RS05415 0.61 +1.5 758,362 + SGL_RS05415 0.64 +1.1 758,517 + SGL_RS05415 0.78 +1.1 759,129 - +1.1 759,129 - +1.8 759,177 + SGL_RS05420 0.12 +1.0 759,248 - SGL_RS05420 0.15 +1.7 759,262 + SGL_RS05420 0.15 +1.4 759,274 - SGL_RS05420 0.16 +1.4 759,345 + SGL_RS05420 0.19 +1.4 759,352 + SGL_RS05420 0.19 +1.7 759,534 - SGL_RS05420 0.27 +1.6 759,827 + SGL_RS05420 0.40 +1.1 759,953 + SGL_RS05420 0.45 +1.2 759,981 - SGL_RS05420 0.46 +1.1 760,049 - SGL_RS05420 0.49 +1.6 760,322 + SGL_RS05420 0.61 +1.3 760,486 - SGL_RS05420 0.68 +1.5 760,628 - SGL_RS05420 0.74 +1.3 760,651 - SGL_RS05420 0.75 +1.5 760,651 - SGL_RS05420 0.75 +1.3 760,737 + SGL_RS05420 0.79 +1.1 760,994 - SGL_RS05420 0.90 +1.4 761,022 + +1.5 761,023 + +1.2 761,023 + +0.6 761,108 - +0.4 761,334 - -0.1 761,397 + +0.5 761,429 + -0.1 761,437 - +0.1 761,439 - +0.3 761,554 + +0.2 761,841 - SGL_RS05425 0.20 -0.2 761,957 - SGL_RS05425 0.27 -0.1 761,989 + SGL_RS05425 0.28 -0.0 762,068 + SGL_RS05425 0.33 +0.2 762,079 + SGL_RS05425 0.34 +0.1
Or see this region's nucleotide sequence