Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03940 and SGL_RS03945 are separated by 439 nucleotides SGL_RS03945 and SGL_RS03950 are separated by 13 nucleotides SGL_RS03950 and SGL_RS03955 are separated by 65 nucleotides
SGL_RS03940: SGL_RS03940 - polysaccharide pyruvyl transferase CsaB, at 436,234 to 437,265
_RS03940
SGL_RS03945: SGL_RS03945 - DUF2949 domain-containing protein, at 437,705 to 437,908
_RS03945
SGL_RS03950: SGL_RS03950 - homocysteine biosynthesis protein, at 437,922 to 439,118
_RS03950
SGL_RS03955: SGL_RS03955 - bifunctional oligoribonuclease/PAP phosphatase NrnA, at 439,184 to 440,437
_RS03955
Position (kb) 437
438
439
440 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 437.418 kb on + strand at 437.418 kb on + strand at 437.436 kb on + strand at 437.445 kb on - strand at 438.092 kb on + strand, within SGL_RS03950 at 438.097 kb on + strand, within SGL_RS03950 at 438.109 kb on + strand, within SGL_RS03950 at 438.180 kb on - strand, within SGL_RS03950 at 438.251 kb on - strand, within SGL_RS03950 at 438.304 kb on + strand, within SGL_RS03950 at 438.305 kb on - strand, within SGL_RS03950 at 438.376 kb on - strand, within SGL_RS03950 at 438.620 kb on - strand, within SGL_RS03950 at 438.637 kb on - strand, within SGL_RS03950 at 438.744 kb on - strand, within SGL_RS03950 at 438.790 kb on + strand, within SGL_RS03950 at 438.881 kb on + strand, within SGL_RS03950 at 438.914 kb on - strand, within SGL_RS03950 at 438.971 kb on + strand, within SGL_RS03950 at 439.067 kb on - strand at 439.212 kb on - strand at 439.360 kb on + strand, within SGL_RS03955 at 439.441 kb on + strand, within SGL_RS03955 at 439.474 kb on - strand, within SGL_RS03955 at 439.474 kb on - strand, within SGL_RS03955 at 439.557 kb on - strand, within SGL_RS03955 at 439.562 kb on + strand, within SGL_RS03955 at 439.627 kb on - strand, within SGL_RS03955 at 439.640 kb on - strand, within SGL_RS03955 at 439.658 kb on + strand, within SGL_RS03955 at 439.671 kb on - strand, within SGL_RS03955 at 439.708 kb on - strand, within SGL_RS03955 at 439.780 kb on - strand, within SGL_RS03955 at 439.899 kb on + strand, within SGL_RS03955 at 439.914 kb on - strand, within SGL_RS03955 at 439.919 kb on - strand, within SGL_RS03955 at 439.924 kb on - strand, within SGL_RS03955 at 439.926 kb on + strand, within SGL_RS03955 at 440.091 kb on - strand, within SGL_RS03955
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 437,418 + -2.5 437,418 + -1.6 437,436 + -2.6 437,445 - -2.8 438,092 + SGL_RS03950 0.14 -4.6 438,097 + SGL_RS03950 0.15 -1.4 438,109 + SGL_RS03950 0.16 -3.9 438,180 - SGL_RS03950 0.22 -3.0 438,251 - SGL_RS03950 0.27 -1.9 438,304 + SGL_RS03950 0.32 -2.8 438,305 - SGL_RS03950 0.32 -2.2 438,376 - SGL_RS03950 0.38 -2.1 438,620 - SGL_RS03950 0.58 -0.2 438,637 - SGL_RS03950 0.60 -2.3 438,744 - SGL_RS03950 0.69 -2.1 438,790 + SGL_RS03950 0.73 -3.5 438,881 + SGL_RS03950 0.80 -1.5 438,914 - SGL_RS03950 0.83 -2.0 438,971 + SGL_RS03950 0.88 -1.8 439,067 - -3.8 439,212 - +0.4 439,360 + SGL_RS03955 0.14 -0.2 439,441 + SGL_RS03955 0.20 -0.2 439,474 - SGL_RS03955 0.23 +0.2 439,474 - SGL_RS03955 0.23 +0.2 439,557 - SGL_RS03955 0.30 -1.0 439,562 + SGL_RS03955 0.30 -0.4 439,627 - SGL_RS03955 0.35 +0.2 439,640 - SGL_RS03955 0.36 +0.7 439,658 + SGL_RS03955 0.38 +0.6 439,671 - SGL_RS03955 0.39 -0.4 439,708 - SGL_RS03955 0.42 +0.3 439,780 - SGL_RS03955 0.48 -0.5 439,899 + SGL_RS03955 0.57 -0.4 439,914 - SGL_RS03955 0.58 -0.6 439,919 - SGL_RS03955 0.59 -0.3 439,924 - SGL_RS03955 0.59 +0.2 439,926 + SGL_RS03955 0.59 -0.7 440,091 - SGL_RS03955 0.72 -0.1
Or see this region's nucleotide sequence