Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03770 and SGL_RS03775 are separated by 16 nucleotides SGL_RS03775 and SGL_RS03780 are separated by 146 nucleotides
SGL_RS03770: SGL_RS03770 - succinate--CoA ligase subunit beta, at 391,899 to 393,104
_RS03770
SGL_RS03775: SGL_RS03775 - membrane protein, at 393,121 to 393,849
_RS03775
SGL_RS03780: SGL_RS03780 - flotillin family protein, at 393,996 to 396,017
_RS03780
Position (kb) 393
394 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 392.142 kb on - strand, within SGL_RS03770 at 392.165 kb on - strand, within SGL_RS03770 at 392.186 kb on + strand, within SGL_RS03770 at 392.195 kb on - strand, within SGL_RS03770 at 392.283 kb on + strand, within SGL_RS03770 at 392.351 kb on + strand, within SGL_RS03770 at 392.383 kb on + strand, within SGL_RS03770 at 392.430 kb on + strand, within SGL_RS03770 at 392.539 kb on + strand, within SGL_RS03770 at 392.584 kb on - strand, within SGL_RS03770 at 392.672 kb on + strand, within SGL_RS03770 at 392.771 kb on - strand, within SGL_RS03770 at 392.781 kb on - strand, within SGL_RS03770 at 392.781 kb on - strand, within SGL_RS03770 at 392.977 kb on - strand, within SGL_RS03770 at 392.992 kb on - strand at 393.017 kb on - strand at 393.099 kb on + strand at 393.112 kb on + strand at 393.305 kb on + strand, within SGL_RS03775 at 393.351 kb on + strand, within SGL_RS03775 at 393.371 kb on + strand, within SGL_RS03775 at 393.372 kb on + strand, within SGL_RS03775 at 393.372 kb on + strand, within SGL_RS03775 at 393.380 kb on - strand, within SGL_RS03775 at 393.578 kb on - strand, within SGL_RS03775 at 393.658 kb on + strand, within SGL_RS03775 at 393.658 kb on + strand, within SGL_RS03775 at 393.666 kb on - strand, within SGL_RS03775 at 393.772 kb on - strand, within SGL_RS03775 at 393.849 kb on - strand at 393.851 kb on + strand at 393.871 kb on - strand at 393.894 kb on - strand at 394.083 kb on - strand at 394.108 kb on + strand at 394.129 kb on - strand at 394.156 kb on + strand at 394.161 kb on + strand at 394.174 kb on - strand at 394.174 kb on - strand at 394.220 kb on - strand, within SGL_RS03780 at 394.236 kb on + strand, within SGL_RS03780 at 394.383 kb on + strand, within SGL_RS03780 at 394.383 kb on + strand, within SGL_RS03780 at 394.383 kb on + strand, within SGL_RS03780 at 394.391 kb on - strand, within SGL_RS03780 at 394.473 kb on + strand, within SGL_RS03780
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 392,142 - SGL_RS03770 0.20 -0.5 392,165 - SGL_RS03770 0.22 -0.2 392,186 + SGL_RS03770 0.24 -0.2 392,195 - SGL_RS03770 0.25 -0.4 392,283 + SGL_RS03770 0.32 +0.4 392,351 + SGL_RS03770 0.37 +0.0 392,383 + SGL_RS03770 0.40 -0.2 392,430 + SGL_RS03770 0.44 -0.1 392,539 + SGL_RS03770 0.53 +0.0 392,584 - SGL_RS03770 0.57 +0.4 392,672 + SGL_RS03770 0.64 +0.0 392,771 - SGL_RS03770 0.72 +0.1 392,781 - SGL_RS03770 0.73 -0.4 392,781 - SGL_RS03770 0.73 -1.4 392,977 - SGL_RS03770 0.89 -0.0 392,992 - -0.0 393,017 - +0.2 393,099 + -0.6 393,112 + -0.2 393,305 + SGL_RS03775 0.25 -3.0 393,351 + SGL_RS03775 0.32 -3.1 393,371 + SGL_RS03775 0.34 -2.3 393,372 + SGL_RS03775 0.34 -1.0 393,372 + SGL_RS03775 0.34 -2.0 393,380 - SGL_RS03775 0.36 -3.2 393,578 - SGL_RS03775 0.63 -0.8 393,658 + SGL_RS03775 0.74 -0.6 393,658 + SGL_RS03775 0.74 -1.5 393,666 - SGL_RS03775 0.75 -3.6 393,772 - SGL_RS03775 0.89 -1.2 393,849 - +0.2 393,851 + -1.1 393,871 - -0.2 393,894 - -1.3 394,083 - -0.3 394,108 + +0.1 394,129 - +0.1 394,156 + +1.0 394,161 + -0.4 394,174 - -0.2 394,174 - +0.0 394,220 - SGL_RS03780 0.11 +0.2 394,236 + SGL_RS03780 0.12 -0.1 394,383 + SGL_RS03780 0.19 +0.1 394,383 + SGL_RS03780 0.19 -0.1 394,383 + SGL_RS03780 0.19 +0.5 394,391 - SGL_RS03780 0.20 +0.9 394,473 + SGL_RS03780 0.24 -0.1
Or see this region's nucleotide sequence