Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS03455 and SGL_RS03460 are separated by 171 nucleotides SGL_RS03460 and SGL_RS03465 are separated by 76 nucleotides SGL_RS03465 and SGL_RS03470 are separated by 111 nucleotides
SGL_RS03455: SGL_RS03455 - tetratricopeptide repeat protein, at 337,861 to 338,331
_RS03455
SGL_RS03460: SGL_RS03460 - hypothetical protein, at 338,503 to 339,063
_RS03460
SGL_RS03465: SGL_RS03465 - allophycocyanin subunit alpha-B, at 339,140 to 339,625
_RS03465
SGL_RS03470: SGL_RS03470 - methionine adenosyltransferase, at 339,737 to 340,999
_RS03470
Position (kb) 339
340 Strain fitness (log2 ratio) -2
-1
0
1 at 338.162 kb on - strand, within SGL_RS03455 at 338.162 kb on - strand, within SGL_RS03455 at 338.162 kb on - strand, within SGL_RS03455 at 338.225 kb on + strand, within SGL_RS03455 at 338.225 kb on + strand, within SGL_RS03455 at 338.239 kb on - strand, within SGL_RS03455 at 338.428 kb on + strand at 338.618 kb on - strand, within SGL_RS03460 at 338.679 kb on + strand, within SGL_RS03460 at 338.724 kb on + strand, within SGL_RS03460 at 338.777 kb on - strand, within SGL_RS03460 at 338.906 kb on - strand, within SGL_RS03460 at 338.929 kb on + strand, within SGL_RS03460 at 339.198 kb on + strand, within SGL_RS03465 at 339.273 kb on + strand, within SGL_RS03465 at 339.283 kb on - strand, within SGL_RS03465 at 339.318 kb on + strand, within SGL_RS03465 at 339.410 kb on + strand, within SGL_RS03465 at 339.439 kb on - strand, within SGL_RS03465 at 339.444 kb on + strand, within SGL_RS03465 at 339.444 kb on + strand, within SGL_RS03465 at 339.621 kb on + strand at 339.674 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 338,162 - SGL_RS03455 0.64 -0.1 338,162 - SGL_RS03455 0.64 +0.1 338,162 - SGL_RS03455 0.64 +0.2 338,225 + SGL_RS03455 0.77 +0.2 338,225 + SGL_RS03455 0.77 +0.1 338,239 - SGL_RS03455 0.80 -0.3 338,428 + +0.0 338,618 - SGL_RS03460 0.20 -0.2 338,679 + SGL_RS03460 0.31 -0.5 338,724 + SGL_RS03460 0.39 -0.4 338,777 - SGL_RS03460 0.49 -1.2 338,906 - SGL_RS03460 0.72 -0.6 338,929 + SGL_RS03460 0.76 -0.5 339,198 + SGL_RS03465 0.12 -1.3 339,273 + SGL_RS03465 0.27 -2.0 339,283 - SGL_RS03465 0.29 -1.2 339,318 + SGL_RS03465 0.37 +0.1 339,410 + SGL_RS03465 0.56 -0.2 339,439 - SGL_RS03465 0.62 -0.9 339,444 + SGL_RS03465 0.63 -2.3 339,444 + SGL_RS03465 0.63 -1.0 339,621 + -0.5 339,674 - +0.8
Or see this region's nucleotide sequence