Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02810

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02800 and SGL_RS02805 are separated by 80 nucleotidesSGL_RS02805 and SGL_RS02810 are separated by 75 nucleotidesSGL_RS02810 and SGL_RS02815 are separated by 219 nucleotides SGL_RS02800: SGL_RS02800 - hypothetical protein, at 196,611 to 196,991 _RS02800 SGL_RS02805: SGL_RS02805 - universal stress protein, at 197,072 to 197,557 _RS02805 SGL_RS02810: SGL_RS02810 - EAL domain-containing protein, at 197,633 to 200,185 _RS02810 SGL_RS02815: SGL_RS02815 - EAL domain-containing protein, at 200,405 to 202,525 _RS02815 Position (kb) 197 198 199 200 201Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 196.763 kb on - strand, within SGL_RS02800at 196.851 kb on + strand, within SGL_RS02800at 196.882 kb on - strand, within SGL_RS02800at 196.973 kb on + strandat 196.981 kb on - strandat 197.152 kb on + strand, within SGL_RS02805at 197.152 kb on + strand, within SGL_RS02805at 197.153 kb on + strand, within SGL_RS02805at 197.155 kb on + strand, within SGL_RS02805at 197.160 kb on - strand, within SGL_RS02805at 197.276 kb on - strand, within SGL_RS02805at 197.423 kb on + strand, within SGL_RS02805at 197.423 kb on - strand, within SGL_RS02805at 197.433 kb on - strand, within SGL_RS02805at 197.445 kb on - strand, within SGL_RS02805at 197.519 kb on + strandat 197.655 kb on + strandat 197.708 kb on + strandat 197.791 kb on + strandat 197.868 kb on + strandat 197.874 kb on - strandat 198.006 kb on + strand, within SGL_RS02810at 198.235 kb on - strand, within SGL_RS02810at 198.305 kb on + strand, within SGL_RS02810at 198.340 kb on + strand, within SGL_RS02810at 198.464 kb on - strand, within SGL_RS02810at 198.523 kb on - strand, within SGL_RS02810at 198.555 kb on + strand, within SGL_RS02810at 198.583 kb on - strand, within SGL_RS02810at 198.691 kb on - strand, within SGL_RS02810at 198.794 kb on + strand, within SGL_RS02810at 198.802 kb on - strand, within SGL_RS02810at 198.802 kb on - strand, within SGL_RS02810at 198.807 kb on - strand, within SGL_RS02810at 198.875 kb on + strand, within SGL_RS02810at 198.924 kb on + strand, within SGL_RS02810at 199.054 kb on - strand, within SGL_RS02810at 199.155 kb on + strand, within SGL_RS02810at 199.225 kb on - strand, within SGL_RS02810at 199.486 kb on - strand, within SGL_RS02810at 199.532 kb on + strand, within SGL_RS02810at 199.701 kb on + strand, within SGL_RS02810at 199.761 kb on - strand, within SGL_RS02810at 199.834 kb on + strand, within SGL_RS02810at 199.849 kb on - strand, within SGL_RS02810at 200.040 kb on - strandat 200.108 kb on - strandat 200.394 kb on + strandat 200.695 kb on - strand, within SGL_RS02815at 200.722 kb on + strand, within SGL_RS02815at 200.730 kb on - strand, within SGL_RS02815at 200.730 kb on - strand, within SGL_RS02815at 200.730 kb on - strand, within SGL_RS02815at 200.779 kb on + strand, within SGL_RS02815at 200.794 kb on + strand, within SGL_RS02815at 200.855 kb on - strand, within SGL_RS02815at 200.927 kb on - strand, within SGL_RS02815at 201.012 kb on + strand, within SGL_RS02815

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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196,763 - SGL_RS02800 0.40 -0.5
196,851 + SGL_RS02800 0.63 -0.4
196,882 - SGL_RS02800 0.71 -0.2
196,973 + -2.2
196,981 - -0.9
197,152 + SGL_RS02805 0.16 -3.0
197,152 + SGL_RS02805 0.16 -3.2
197,153 + SGL_RS02805 0.17 -3.8
197,155 + SGL_RS02805 0.17 -2.0
197,160 - SGL_RS02805 0.18 -2.9
197,276 - SGL_RS02805 0.42 -3.6
197,423 + SGL_RS02805 0.72 -3.4
197,423 - SGL_RS02805 0.72 -3.7
197,433 - SGL_RS02805 0.74 -2.0
197,445 - SGL_RS02805 0.77 -2.5
197,519 + -3.7
197,655 + -4.3
197,708 + -5.2
197,791 + -3.5
197,868 + -3.3
197,874 - -4.1
198,006 + SGL_RS02810 0.15 -3.4
198,235 - SGL_RS02810 0.24 -3.4
198,305 + SGL_RS02810 0.26 -4.7
198,340 + SGL_RS02810 0.28 -4.4
198,464 - SGL_RS02810 0.33 -2.8
198,523 - SGL_RS02810 0.35 -3.8
198,555 + SGL_RS02810 0.36 -4.2
198,583 - SGL_RS02810 0.37 -3.6
198,691 - SGL_RS02810 0.41 -5.0
198,794 + SGL_RS02810 0.45 -4.4
198,802 - SGL_RS02810 0.46 -5.9
198,802 - SGL_RS02810 0.46 -4.9
198,807 - SGL_RS02810 0.46 -4.6
198,875 + SGL_RS02810 0.49 -3.7
198,924 + SGL_RS02810 0.51 -4.1
199,054 - SGL_RS02810 0.56 -4.0
199,155 + SGL_RS02810 0.60 -3.7
199,225 - SGL_RS02810 0.62 -3.4
199,486 - SGL_RS02810 0.73 -3.5
199,532 + SGL_RS02810 0.74 -4.4
199,701 + SGL_RS02810 0.81 -2.5
199,761 - SGL_RS02810 0.83 -1.4
199,834 + SGL_RS02810 0.86 -4.4
199,849 - SGL_RS02810 0.87 -4.2
200,040 - -4.2
200,108 - -4.7
200,394 + +1.4
200,695 - SGL_RS02815 0.14 +1.6
200,722 + SGL_RS02815 0.15 +0.9
200,730 - SGL_RS02815 0.15 +1.2
200,730 - SGL_RS02815 0.15 +1.6
200,730 - SGL_RS02815 0.15 +1.0
200,779 + SGL_RS02815 0.18 +1.5
200,794 + SGL_RS02815 0.18 +1.4
200,855 - SGL_RS02815 0.21 +1.4
200,927 - SGL_RS02815 0.25 +1.3
201,012 + SGL_RS02815 0.29 +0.8

Or see this region's nucleotide sequence