Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02475

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02470 and SGL_RS02475 are separated by 63 nucleotidesSGL_RS02475 and SGL_RS02480 are separated by 259 nucleotides SGL_RS02470: SGL_RS02470 - transcription termination factor NusA, at 132,483 to 133,859 _RS02470 SGL_RS02475: SGL_RS02475 - YlxR family protein, at 133,923 to 134,177 _RS02475 SGL_RS02480: SGL_RS02480 - translation initiation factor IF-2, at 134,437 to 137,442 _RS02480 Position (kb) 133 134 135Strain fitness (log2 ratio) -2 -1 0 1at 133.662 kb on + strand, within SGL_RS02470at 133.667 kb on + strand, within SGL_RS02470at 133.667 kb on + strand, within SGL_RS02470at 133.667 kb on + strand, within SGL_RS02470at 133.675 kb on - strand, within SGL_RS02470at 133.700 kb on - strand, within SGL_RS02470at 133.768 kb on + strandat 133.832 kb on + strandat 133.866 kb on - strandat 133.893 kb on + strandat 134.002 kb on + strand, within SGL_RS02475at 134.111 kb on + strand, within SGL_RS02475

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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133,662 + SGL_RS02470 0.86 +0.4
133,667 + SGL_RS02470 0.86 -0.6
133,667 + SGL_RS02470 0.86 -0.5
133,667 + SGL_RS02470 0.86 -1.1
133,675 - SGL_RS02470 0.87 -0.7
133,700 - SGL_RS02470 0.88 +0.4
133,768 + +0.4
133,832 + +0.6
133,866 - +0.5
133,893 + +0.3
134,002 + SGL_RS02475 0.31 -2.1
134,111 + SGL_RS02475 0.74 -0.3

Or see this region's nucleotide sequence