Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS02375

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS02365 and SGL_RS02370 are separated by 249 nucleotidesSGL_RS02370 and SGL_RS02375 overlap by 4 nucleotidesSGL_RS02375 and SGL_RS02380 are separated by 40 nucleotides SGL_RS02365: SGL_RS02365 - DUF3181 family protein, at 114,319 to 114,624 _RS02365 SGL_RS02370: SGL_RS02370 - DUF3119 family protein, at 114,874 to 115,272 _RS02370 SGL_RS02375: SGL_RS02375 - DUF3086 domain-containing protein, at 115,269 to 116,477 _RS02375 SGL_RS02380: SGL_RS02380 - cysteine desulfurase family protein, at 116,518 to 117,693 _RS02380 Position (kb) 115 116 117Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 114.339 kb on - strandat 114.494 kb on - strand, within SGL_RS02365at 114.713 kb on - strandat 114.788 kb on + strandat 114.856 kb on + strandat 114.856 kb on + strandat 114.884 kb on + strandat 114.978 kb on + strand, within SGL_RS02370at 115.049 kb on + strand, within SGL_RS02370at 115.415 kb on + strand, within SGL_RS02375at 115.512 kb on + strand, within SGL_RS02375at 115.586 kb on + strand, within SGL_RS02375at 115.586 kb on + strand, within SGL_RS02375at 116.035 kb on + strand, within SGL_RS02375at 116.064 kb on - strand, within SGL_RS02375at 116.089 kb on + strand, within SGL_RS02375at 116.148 kb on - strand, within SGL_RS02375at 116.168 kb on + strand, within SGL_RS02375at 116.176 kb on - strand, within SGL_RS02375at 116.279 kb on - strand, within SGL_RS02375at 116.523 kb on - strandat 116.652 kb on - strand, within SGL_RS02380at 116.681 kb on - strand, within SGL_RS02380at 116.794 kb on + strand, within SGL_RS02380at 116.877 kb on + strand, within SGL_RS02380at 116.898 kb on - strand, within SGL_RS02380at 117.015 kb on - strand, within SGL_RS02380at 117.065 kb on + strand, within SGL_RS02380at 117.107 kb on - strand, within SGL_RS02380at 117.130 kb on - strand, within SGL_RS02380at 117.173 kb on + strand, within SGL_RS02380at 117.233 kb on - strand, within SGL_RS02380at 117.319 kb on + strand, within SGL_RS02380at 117.319 kb on + strand, within SGL_RS02380at 117.333 kb on + strand, within SGL_RS02380at 117.385 kb on + strand, within SGL_RS02380

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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114,339 - +0.1
114,494 - SGL_RS02365 0.57 +0.1
114,713 - +0.4
114,788 + +0.5
114,856 + -0.5
114,856 + +0.7
114,884 + -0.2
114,978 + SGL_RS02370 0.26 -0.4
115,049 + SGL_RS02370 0.44 +0.1
115,415 + SGL_RS02375 0.12 -3.7
115,512 + SGL_RS02375 0.20 -3.1
115,586 + SGL_RS02375 0.26 -4.4
115,586 + SGL_RS02375 0.26 -2.7
116,035 + SGL_RS02375 0.63 -3.5
116,064 - SGL_RS02375 0.66 -1.5
116,089 + SGL_RS02375 0.68 -2.0
116,148 - SGL_RS02375 0.73 -2.2
116,168 + SGL_RS02375 0.74 -2.5
116,176 - SGL_RS02375 0.75 -2.7
116,279 - SGL_RS02375 0.84 -2.6
116,523 - +0.1
116,652 - SGL_RS02380 0.11 -0.3
116,681 - SGL_RS02380 0.14 -0.0
116,794 + SGL_RS02380 0.23 -0.1
116,877 + SGL_RS02380 0.31 -0.2
116,898 - SGL_RS02380 0.32 +0.0
117,015 - SGL_RS02380 0.42 -0.1
117,065 + SGL_RS02380 0.47 -0.2
117,107 - SGL_RS02380 0.50 +0.3
117,130 - SGL_RS02380 0.52 -0.6
117,173 + SGL_RS02380 0.56 +0.3
117,233 - SGL_RS02380 0.61 -0.3
117,319 + SGL_RS02380 0.68 +0.1
117,319 + SGL_RS02380 0.68 +0.3
117,333 + SGL_RS02380 0.69 -0.6
117,385 + SGL_RS02380 0.74 +0.4

Or see this region's nucleotide sequence