Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS01225 and SGL_RS01230 are separated by 771 nucleotides SGL_RS01230 and SGL_RS01235 are separated by 119 nucleotides SGL_RS01235 and SGL_RS01240 are separated by 44 nucleotides
SGL_RS01225: SGL_RS01225 - hypothetical protein, at 15,590 to 16,915
_RS01225
SGL_RS01230: SGL_RS01230 - Crp/Fnr family transcriptional regulator, at 17,687 to 18,409
_RS01230
SGL_RS01235: SGL_RS01235 - class I SAM-dependent methyltransferase, at 18,529 to 19,311
_RS01235
SGL_RS01240: SGL_RS01240 - cupin domain-containing protein, at 19,356 to 19,691
_RS01240
Position (kb) 17
18
19 Strain fitness (log2 ratio) -1
0
1 at 17.595 kb on + strand at 17.596 kb on - strand at 17.670 kb on - strand at 17.725 kb on - strand at 17.763 kb on + strand, within SGL_RS01230 at 17.771 kb on - strand, within SGL_RS01230 at 17.772 kb on + strand, within SGL_RS01230 at 17.772 kb on + strand, within SGL_RS01230 at 17.780 kb on - strand, within SGL_RS01230 at 17.780 kb on - strand, within SGL_RS01230 at 17.803 kb on + strand, within SGL_RS01230 at 17.955 kb on - strand, within SGL_RS01230 at 17.957 kb on + strand, within SGL_RS01230 at 17.989 kb on + strand, within SGL_RS01230 at 18.028 kb on - strand, within SGL_RS01230 at 18.049 kb on - strand, within SGL_RS01230 at 18.082 kb on + strand, within SGL_RS01230 at 18.106 kb on + strand, within SGL_RS01230 at 18.107 kb on + strand, within SGL_RS01230 at 18.130 kb on - strand, within SGL_RS01230 at 18.153 kb on + strand, within SGL_RS01230 at 18.237 kb on - strand, within SGL_RS01230 at 18.339 kb on + strand at 18.416 kb on + strand at 18.424 kb on - strand at 18.432 kb on - strand at 18.453 kb on - strand at 18.497 kb on - strand at 18.548 kb on + strand at 18.568 kb on + strand at 18.728 kb on + strand, within SGL_RS01235 at 18.806 kb on + strand, within SGL_RS01235 at 18.849 kb on + strand, within SGL_RS01235 at 18.936 kb on + strand, within SGL_RS01235 at 18.962 kb on + strand, within SGL_RS01235 at 19.021 kb on + strand, within SGL_RS01235 at 19.031 kb on + strand, within SGL_RS01235 at 19.046 kb on + strand, within SGL_RS01235 at 19.054 kb on - strand, within SGL_RS01235 at 19.076 kb on - strand, within SGL_RS01235 at 19.113 kb on + strand, within SGL_RS01235 at 19.125 kb on + strand, within SGL_RS01235 at 19.145 kb on - strand, within SGL_RS01235 at 19.170 kb on + strand, within SGL_RS01235 at 19.271 kb on + strand at 19.288 kb on - strand at 19.404 kb on - strand, within SGL_RS01240
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 17,595 + +0.3 17,596 - -0.1 17,670 - +0.0 17,725 - +0.8 17,763 + SGL_RS01230 0.11 +0.5 17,771 - SGL_RS01230 0.12 +0.6 17,772 + SGL_RS01230 0.12 +0.5 17,772 + SGL_RS01230 0.12 -0.4 17,780 - SGL_RS01230 0.13 -0.3 17,780 - SGL_RS01230 0.13 -0.6 17,803 + SGL_RS01230 0.16 -0.4 17,955 - SGL_RS01230 0.37 -0.4 17,957 + SGL_RS01230 0.37 +0.7 17,989 + SGL_RS01230 0.42 +0.1 18,028 - SGL_RS01230 0.47 +0.2 18,049 - SGL_RS01230 0.50 +0.7 18,082 + SGL_RS01230 0.55 +0.4 18,106 + SGL_RS01230 0.58 -0.6 18,107 + SGL_RS01230 0.58 -0.1 18,130 - SGL_RS01230 0.61 +0.1 18,153 + SGL_RS01230 0.64 -1.0 18,237 - SGL_RS01230 0.76 +0.0 18,339 + -0.1 18,416 + -0.7 18,424 - +0.4 18,432 - -1.2 18,453 - -0.8 18,497 - -0.3 18,548 + -0.2 18,568 + -0.2 18,728 + SGL_RS01235 0.25 -0.2 18,806 + SGL_RS01235 0.35 +0.5 18,849 + SGL_RS01235 0.41 +0.1 18,936 + SGL_RS01235 0.52 +0.2 18,962 + SGL_RS01235 0.55 -0.2 19,021 + SGL_RS01235 0.63 -0.1 19,031 + SGL_RS01235 0.64 -0.1 19,046 + SGL_RS01235 0.66 -0.6 19,054 - SGL_RS01235 0.67 +0.3 19,076 - SGL_RS01235 0.70 +0.1 19,113 + SGL_RS01235 0.75 +0.1 19,125 + SGL_RS01235 0.76 +0.5 19,145 - SGL_RS01235 0.79 +0.8 19,170 + SGL_RS01235 0.82 +0.2 19,271 + -0.5 19,288 - +0.8 19,404 - SGL_RS01240 0.14 +1.0
Or see this region's nucleotide sequence