Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS00255 and SGL_RS19680 are separated by 75 nucleotides SGL_RS19680 and SGL_RS00260 are separated by 236 nucleotides SGL_RS00260 and SGL_RS00265 are separated by 164 nucleotides
SGL_RS00255: SGL_RS00255 - glycosyltransferase family 2 protein, at 54,911 to 56,281
_RS00255
SGL_RS19680: SGL_RS19680 - IS1 family transposase, at 56,357 to 56,617
_RS19680
SGL_RS00260: SGL_RS00260 - sugar transferase, at 56,854 to 57,807
_RS00260
SGL_RS00265: SGL_RS00265 - NACHT domain-containing NTPase, at 57,972 to 60,323
_RS00265
Position (kb) 56
57
58 Strain fitness (log2 ratio) -1
0
1
2 at 56.090 kb on - strand, within SGL_RS00255 at 56.149 kb on - strand at 56.161 kb on + strand at 56.161 kb on + strand at 56.379 kb on + strand at 56.387 kb on - strand, within SGL_RS19680 at 56.557 kb on + strand, within SGL_RS19680 at 56.576 kb on - strand, within SGL_RS19680 at 56.645 kb on + strand at 56.653 kb on - strand at 56.775 kb on + strand at 56.804 kb on - strand at 57.000 kb on - strand, within SGL_RS00260 at 57.046 kb on - strand, within SGL_RS00260 at 57.058 kb on + strand, within SGL_RS00260 at 57.125 kb on + strand, within SGL_RS00260 at 57.236 kb on + strand, within SGL_RS00260 at 57.384 kb on + strand, within SGL_RS00260 at 57.406 kb on + strand, within SGL_RS00260 at 57.411 kb on + strand, within SGL_RS00260 at 57.535 kb on - strand, within SGL_RS00260 at 57.562 kb on - strand, within SGL_RS00260 at 57.590 kb on - strand, within SGL_RS00260 at 57.605 kb on + strand, within SGL_RS00260 at 57.613 kb on - strand, within SGL_RS00260 at 57.658 kb on + strand, within SGL_RS00260 at 57.666 kb on - strand, within SGL_RS00260 at 57.713 kb on + strand at 57.795 kb on - strand at 57.797 kb on + strand at 57.805 kb on - strand at 57.824 kb on - strand at 57.841 kb on + strand at 57.963 kb on + strand at 57.994 kb on - strand at 58.029 kb on + strand at 58.075 kb on + strand at 58.238 kb on - strand, within SGL_RS00265 at 58.246 kb on - strand, within SGL_RS00265 at 58.262 kb on + strand, within SGL_RS00265 at 58.430 kb on + strand, within SGL_RS00265 at 58.514 kb on + strand, within SGL_RS00265 at 58.576 kb on + strand, within SGL_RS00265 at 58.588 kb on + strand, within SGL_RS00265 at 58.688 kb on + strand, within SGL_RS00265 at 58.805 kb on - strand, within SGL_RS00265
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 56,090 - SGL_RS00255 0.86 +0.2 56,149 - +0.8 56,161 + +0.7 56,161 + +0.6 56,379 + +0.1 56,387 - SGL_RS19680 0.11 +0.0 56,557 + SGL_RS19680 0.77 +0.3 56,576 - SGL_RS19680 0.84 +0.0 56,645 + +0.2 56,653 - -0.6 56,775 + +0.2 56,804 - +0.2 57,000 - SGL_RS00260 0.15 +1.6 57,046 - SGL_RS00260 0.20 +1.8 57,058 + SGL_RS00260 0.21 +1.6 57,125 + SGL_RS00260 0.28 +1.8 57,236 + SGL_RS00260 0.40 +2.0 57,384 + SGL_RS00260 0.56 +2.5 57,406 + SGL_RS00260 0.58 +1.9 57,411 + SGL_RS00260 0.58 +1.6 57,535 - SGL_RS00260 0.71 +1.4 57,562 - SGL_RS00260 0.74 +2.0 57,590 - SGL_RS00260 0.77 +1.8 57,605 + SGL_RS00260 0.79 +1.8 57,613 - SGL_RS00260 0.80 +1.2 57,658 + SGL_RS00260 0.84 +2.1 57,666 - SGL_RS00260 0.85 +1.9 57,713 + +1.4 57,795 - +2.0 57,797 + +1.9 57,805 - +1.4 57,824 - +1.8 57,841 + +1.5 57,963 + +0.7 57,994 - +1.8 58,029 + +2.4 58,075 + +2.0 58,238 - SGL_RS00265 0.11 +1.8 58,246 - SGL_RS00265 0.12 +1.8 58,262 + SGL_RS00265 0.12 +1.7 58,430 + SGL_RS00265 0.19 +1.7 58,514 + SGL_RS00265 0.23 +2.7 58,576 + SGL_RS00265 0.26 +1.7 58,588 + SGL_RS00265 0.26 +1.9 58,688 + SGL_RS00265 0.30 +1.9 58,805 - SGL_RS00265 0.35 +2.3
Or see this region's nucleotide sequence