Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS00250

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS00245 and SGL_RS00250 are separated by 92 nucleotidesSGL_RS00250 and SGL_RS00255 are separated by 0 nucleotides SGL_RS00245: SGL_RS00245 - glycosyltransferase, at 53,037 to 54,026 _RS00245 SGL_RS00250: SGL_RS00250 - WecB/TagA/CpsF family glycosyltransferase, at 54,119 to 54,910 _RS00250 SGL_RS00255: SGL_RS00255 - glycosyltransferase family 2 protein, at 54,911 to 56,281 _RS00255 Position (kb) 54 55Strain fitness (log2 ratio) -2 -1 0 1 2at 53.190 kb on - strand, within SGL_RS00245at 53.273 kb on - strand, within SGL_RS00245at 53.283 kb on - strand, within SGL_RS00245at 53.357 kb on + strand, within SGL_RS00245at 53.395 kb on - strand, within SGL_RS00245at 53.396 kb on + strand, within SGL_RS00245at 53.426 kb on + strand, within SGL_RS00245at 53.426 kb on + strand, within SGL_RS00245at 53.452 kb on - strand, within SGL_RS00245at 53.452 kb on - strand, within SGL_RS00245at 53.514 kb on + strand, within SGL_RS00245at 53.540 kb on - strand, within SGL_RS00245at 53.559 kb on - strand, within SGL_RS00245at 53.561 kb on + strand, within SGL_RS00245at 53.561 kb on - strand, within SGL_RS00245at 53.669 kb on - strand, within SGL_RS00245at 53.731 kb on + strand, within SGL_RS00245at 53.749 kb on + strand, within SGL_RS00245at 53.828 kb on + strand, within SGL_RS00245at 53.971 kb on + strandat 54.068 kb on - strandat 54.209 kb on - strand, within SGL_RS00250at 54.608 kb on - strand, within SGL_RS00250at 54.608 kb on - strand, within SGL_RS00250at 54.638 kb on - strand, within SGL_RS00250at 54.686 kb on + strand, within SGL_RS00250at 54.859 kb on + strandat 54.859 kb on + strandat 54.868 kb on + strandat 54.888 kb on - strandat 54.905 kb on + strandat 54.929 kb on + strandat 54.956 kb on + strandat 54.966 kb on + strandat 54.966 kb on + strandat 54.966 kb on + strandat 54.974 kb on - strandat 55.129 kb on + strand, within SGL_RS00255at 55.225 kb on - strand, within SGL_RS00255at 55.241 kb on + strand, within SGL_RS00255at 55.249 kb on - strand, within SGL_RS00255at 55.359 kb on + strand, within SGL_RS00255at 55.414 kb on + strand, within SGL_RS00255at 55.414 kb on + strand, within SGL_RS00255at 55.432 kb on - strand, within SGL_RS00255at 55.544 kb on + strand, within SGL_RS00255at 55.558 kb on + strand, within SGL_RS00255at 55.691 kb on + strand, within SGL_RS00255at 55.721 kb on + strand, within SGL_RS00255at 55.732 kb on + strand, within SGL_RS00255at 55.795 kb on + strand, within SGL_RS00255at 55.835 kb on + strand, within SGL_RS00255at 55.843 kb on - strand, within SGL_RS00255at 55.843 kb on - strand, within SGL_RS00255at 55.845 kb on + strand, within SGL_RS00255at 55.845 kb on + strand, within SGL_RS00255at 55.853 kb on - strand, within SGL_RS00255at 55.853 kb on - strand, within SGL_RS00255

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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53,190 - SGL_RS00245 0.15 -1.2
53,273 - SGL_RS00245 0.24 -1.0
53,283 - SGL_RS00245 0.25 -1.0
53,357 + SGL_RS00245 0.32 -2.0
53,395 - SGL_RS00245 0.36 -1.5
53,396 + SGL_RS00245 0.36 -0.9
53,426 + SGL_RS00245 0.39 -1.3
53,426 + SGL_RS00245 0.39 -0.8
53,452 - SGL_RS00245 0.42 -0.7
53,452 - SGL_RS00245 0.42 -1.4
53,514 + SGL_RS00245 0.48 -1.5
53,540 - SGL_RS00245 0.51 -1.1
53,559 - SGL_RS00245 0.53 -2.0
53,561 + SGL_RS00245 0.53 -1.7
53,561 - SGL_RS00245 0.53 -1.1
53,669 - SGL_RS00245 0.64 -0.8
53,731 + SGL_RS00245 0.70 -0.6
53,749 + SGL_RS00245 0.72 -0.9
53,828 + SGL_RS00245 0.80 -1.4
53,971 + +0.9
54,068 - +2.1
54,209 - SGL_RS00250 0.11 +1.9
54,608 - SGL_RS00250 0.62 +2.1
54,608 - SGL_RS00250 0.62 +1.7
54,638 - SGL_RS00250 0.66 +1.9
54,686 + SGL_RS00250 0.72 +1.7
54,859 + -0.7
54,859 + -0.8
54,868 + -0.5
54,888 - +0.5
54,905 + +0.6
54,929 + -0.3
54,956 + -0.3
54,966 + -0.2
54,966 + -0.1
54,966 + +0.3
54,974 - +0.1
55,129 + SGL_RS00255 0.16 +0.1
55,225 - SGL_RS00255 0.23 +0.4
55,241 + SGL_RS00255 0.24 +0.8
55,249 - SGL_RS00255 0.25 +1.1
55,359 + SGL_RS00255 0.33 +0.9
55,414 + SGL_RS00255 0.37 +0.5
55,414 + SGL_RS00255 0.37 +0.9
55,432 - SGL_RS00255 0.38 +0.8
55,544 + SGL_RS00255 0.46 +1.1
55,558 + SGL_RS00255 0.47 +0.3
55,691 + SGL_RS00255 0.57 +0.7
55,721 + SGL_RS00255 0.59 +1.1
55,732 + SGL_RS00255 0.60 +0.6
55,795 + SGL_RS00255 0.64 +0.9
55,835 + SGL_RS00255 0.67 +0.4
55,843 - SGL_RS00255 0.68 +0.9
55,843 - SGL_RS00255 0.68 -0.0
55,845 + SGL_RS00255 0.68 +0.3
55,845 + SGL_RS00255 0.68 +0.8
55,853 - SGL_RS00255 0.69 +0.6
55,853 - SGL_RS00255 0.69 +0.9

Or see this region's nucleotide sequence