Experiment: Ethanol 2 vol%
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SGL_RS00235 and SGL_RS00240 are separated by 218 nucleotides SGL_RS00240 and SGL_RS00245 are separated by 44 nucleotides SGL_RS00245 and SGL_RS00250 are separated by 92 nucleotides SGL_RS00250 and SGL_RS00255 are separated by 0 nucleotides
SGL_RS00235: SGL_RS00235 - cellulose synthase operon protein YhjQ/BcsQ, at 50,111 to 52,333
_RS00235
SGL_RS00240: SGL_RS00240 - cyanoexosortase A system-associated protein, at 52,552 to 52,992
_RS00240
SGL_RS00245: SGL_RS00245 - glycosyltransferase, at 53,037 to 54,026
_RS00245
SGL_RS00250: SGL_RS00250 - WecB/TagA/CpsF family glycosyltransferase, at 54,119 to 54,910
_RS00250
SGL_RS00255: SGL_RS00255 - glycosyltransferase family 2 protein, at 54,911 to 56,281
_RS00255
Position (kb) 53
54
55 Strain fitness (log2 ratio) -2
-1
0
1
2 at 52.138 kb on - strand at 52.222 kb on + strand at 52.276 kb on - strand at 52.365 kb on - strand at 52.380 kb on + strand at 52.382 kb on + strand at 52.429 kb on - strand at 52.513 kb on - strand at 52.515 kb on + strand at 52.515 kb on + strand at 52.515 kb on + strand at 52.515 kb on + strand at 52.545 kb on - strand at 52.593 kb on + strand at 52.620 kb on + strand, within SGL_RS00240 at 52.620 kb on + strand, within SGL_RS00240 at 52.706 kb on + strand, within SGL_RS00240 at 52.868 kb on - strand, within SGL_RS00240 at 52.927 kb on + strand, within SGL_RS00240 at 52.953 kb on + strand at 52.958 kb on + strand at 52.958 kb on + strand at 52.958 kb on + strand at 52.961 kb on - strand at 52.966 kb on - strand at 52.966 kb on - strand at 52.966 kb on - strand at 52.986 kb on + strand at 52.994 kb on - strand at 52.994 kb on - strand at 53.002 kb on + strand at 53.025 kb on + strand at 53.083 kb on + strand at 53.113 kb on + strand at 53.190 kb on - strand, within SGL_RS00245 at 53.273 kb on - strand, within SGL_RS00245 at 53.283 kb on - strand, within SGL_RS00245 at 53.357 kb on + strand, within SGL_RS00245 at 53.395 kb on - strand, within SGL_RS00245 at 53.396 kb on + strand, within SGL_RS00245 at 53.426 kb on + strand, within SGL_RS00245 at 53.426 kb on + strand, within SGL_RS00245 at 53.452 kb on - strand, within SGL_RS00245 at 53.452 kb on - strand, within SGL_RS00245 at 53.514 kb on + strand, within SGL_RS00245 at 53.540 kb on - strand, within SGL_RS00245 at 53.559 kb on - strand, within SGL_RS00245 at 53.561 kb on + strand, within SGL_RS00245 at 53.561 kb on - strand, within SGL_RS00245 at 53.669 kb on - strand, within SGL_RS00245 at 53.731 kb on + strand, within SGL_RS00245 at 53.749 kb on + strand, within SGL_RS00245 at 53.828 kb on + strand, within SGL_RS00245 at 53.971 kb on + strand at 54.068 kb on - strand at 54.209 kb on - strand, within SGL_RS00250 at 54.608 kb on - strand, within SGL_RS00250 at 54.608 kb on - strand, within SGL_RS00250 at 54.638 kb on - strand, within SGL_RS00250 at 54.686 kb on + strand, within SGL_RS00250 at 54.859 kb on + strand at 54.859 kb on + strand at 54.868 kb on + strand at 54.888 kb on - strand at 54.905 kb on + strand at 54.929 kb on + strand at 54.956 kb on + strand at 54.966 kb on + strand at 54.966 kb on + strand at 54.966 kb on + strand at 54.974 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ethanol 2 vol% remove 52,138 - +1.2 52,222 + -0.1 52,276 - +0.9 52,365 - +0.9 52,380 + +1.4 52,382 + +1.2 52,429 - +0.5 52,513 - +0.2 52,515 + -0.3 52,515 + +0.2 52,515 + -0.3 52,515 + +0.2 52,545 - -0.5 52,593 + +0.4 52,620 + SGL_RS00240 0.15 -0.4 52,620 + SGL_RS00240 0.15 +0.4 52,706 + SGL_RS00240 0.35 +0.6 52,868 - SGL_RS00240 0.72 +0.4 52,927 + SGL_RS00240 0.85 -0.0 52,953 + +0.5 52,958 + +0.1 52,958 + -0.7 52,958 + +0.5 52,961 - +0.3 52,966 - +0.0 52,966 - -1.2 52,966 - -0.2 52,986 + -0.1 52,994 - +0.0 52,994 - +0.1 53,002 + -0.2 53,025 + -0.1 53,083 + -1.4 53,113 + -0.3 53,190 - SGL_RS00245 0.15 -1.2 53,273 - SGL_RS00245 0.24 -1.0 53,283 - SGL_RS00245 0.25 -1.0 53,357 + SGL_RS00245 0.32 -2.0 53,395 - SGL_RS00245 0.36 -1.5 53,396 + SGL_RS00245 0.36 -0.9 53,426 + SGL_RS00245 0.39 -1.3 53,426 + SGL_RS00245 0.39 -0.8 53,452 - SGL_RS00245 0.42 -0.7 53,452 - SGL_RS00245 0.42 -1.4 53,514 + SGL_RS00245 0.48 -1.5 53,540 - SGL_RS00245 0.51 -1.1 53,559 - SGL_RS00245 0.53 -2.0 53,561 + SGL_RS00245 0.53 -1.7 53,561 - SGL_RS00245 0.53 -1.1 53,669 - SGL_RS00245 0.64 -0.8 53,731 + SGL_RS00245 0.70 -0.6 53,749 + SGL_RS00245 0.72 -0.9 53,828 + SGL_RS00245 0.80 -1.4 53,971 + +0.9 54,068 - +2.1 54,209 - SGL_RS00250 0.11 +1.9 54,608 - SGL_RS00250 0.62 +2.1 54,608 - SGL_RS00250 0.62 +1.7 54,638 - SGL_RS00250 0.66 +1.9 54,686 + SGL_RS00250 0.72 +1.7 54,859 + -0.7 54,859 + -0.8 54,868 + -0.5 54,888 - +0.5 54,905 + +0.6 54,929 + -0.3 54,956 + -0.3 54,966 + -0.2 54,966 + -0.1 54,966 + +0.3 54,974 - +0.1
Or see this region's nucleotide sequence