Strain Fitness in Synechocystis sp000284455 PCC 6803 around SGL_RS00195

Experiment: Ethanol 2 vol%

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSGL_RS00190 and SGL_RS00195 are separated by 94 nucleotidesSGL_RS00195 and SGL_RS00200 are separated by 44 nucleotidesSGL_RS00200 and SGL_RS00205 are separated by 181 nucleotides SGL_RS00190: SGL_RS00190 - sulfotransferase, at 40,411 to 41,316 _RS00190 SGL_RS00195: SGL_RS00195 - glycosyltransferase family 2 protein, at 41,411 to 42,397 _RS00195 SGL_RS00200: SGL_RS00200 - glycosyltransferase family 25 protein, at 42,442 to 43,161 _RS00200 SGL_RS00205: SGL_RS00205 - sulfotransferase, at 43,343 to 44,293 _RS00205 Position (kb) 41 42 43Strain fitness (log2 ratio) -2 -1 0 1at 40.424 kb on + strandat 40.482 kb on + strandat 40.483 kb on - strandat 40.509 kb on - strand, within SGL_RS00190at 40.516 kb on + strand, within SGL_RS00190at 40.649 kb on - strand, within SGL_RS00190at 40.779 kb on - strand, within SGL_RS00190at 40.789 kb on - strand, within SGL_RS00190at 40.832 kb on + strand, within SGL_RS00190at 41.013 kb on + strand, within SGL_RS00190at 41.042 kb on + strand, within SGL_RS00190at 41.046 kb on + strand, within SGL_RS00190at 41.083 kb on - strand, within SGL_RS00190at 41.111 kb on - strand, within SGL_RS00190at 41.392 kb on + strandat 41.533 kb on + strand, within SGL_RS00195at 41.608 kb on + strand, within SGL_RS00195at 41.608 kb on + strand, within SGL_RS00195at 41.616 kb on - strand, within SGL_RS00195at 41.616 kb on - strand, within SGL_RS00195at 41.616 kb on - strand, within SGL_RS00195at 41.627 kb on - strand, within SGL_RS00195at 41.629 kb on + strand, within SGL_RS00195at 41.637 kb on - strand, within SGL_RS00195at 41.656 kb on - strand, within SGL_RS00195at 41.698 kb on - strand, within SGL_RS00195at 41.878 kb on - strand, within SGL_RS00195at 42.008 kb on - strand, within SGL_RS00195at 42.180 kb on - strand, within SGL_RS00195at 42.534 kb on + strand, within SGL_RS00200at 42.637 kb on - strand, within SGL_RS00200at 42.651 kb on - strand, within SGL_RS00200at 42.976 kb on + strand, within SGL_RS00200at 43.113 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ethanol 2 vol%
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40,424 + +0.1
40,482 + +0.3
40,483 - -0.0
40,509 - SGL_RS00190 0.11 +0.0
40,516 + SGL_RS00190 0.12 +0.3
40,649 - SGL_RS00190 0.26 -0.7
40,779 - SGL_RS00190 0.41 -0.2
40,789 - SGL_RS00190 0.42 -0.6
40,832 + SGL_RS00190 0.46 -1.2
41,013 + SGL_RS00190 0.66 -0.1
41,042 + SGL_RS00190 0.70 -0.1
41,046 + SGL_RS00190 0.70 -0.3
41,083 - SGL_RS00190 0.74 -0.7
41,111 - SGL_RS00190 0.77 -0.7
41,392 + +0.3
41,533 + SGL_RS00195 0.12 -1.7
41,608 + SGL_RS00195 0.20 -0.9
41,608 + SGL_RS00195 0.20 -1.8
41,616 - SGL_RS00195 0.21 -2.3
41,616 - SGL_RS00195 0.21 -1.0
41,616 - SGL_RS00195 0.21 -1.7
41,627 - SGL_RS00195 0.22 -1.5
41,629 + SGL_RS00195 0.22 -1.7
41,637 - SGL_RS00195 0.23 -1.1
41,656 - SGL_RS00195 0.25 -1.5
41,698 - SGL_RS00195 0.29 -2.5
41,878 - SGL_RS00195 0.47 -1.4
42,008 - SGL_RS00195 0.60 -0.6
42,180 - SGL_RS00195 0.78 -1.0
42,534 + SGL_RS00200 0.13 +0.6
42,637 - SGL_RS00200 0.27 +0.5
42,651 - SGL_RS00200 0.29 +0.5
42,976 + SGL_RS00200 0.74 +1.0
43,113 + -0.2

Or see this region's nucleotide sequence